Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B19
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    29   0.58 
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   2.4  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   2.4  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   5.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   5.5  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 753 AKSXIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLXRXIYETVLXSSGTNMLRLAIHS 577
           +KS +    T   +S LSWQ  ++R  +K  ++HK  +    ++L  S  N  R  +H+
Sbjct: 8   SKSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHK--KNDTSSLLDGSNKNTDRSILHT 64


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = -1

Query: 297 KLTALYTLVP-FV----PPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDITATPS 136
           K+ A Y LVP FV     P L +  + + K F  + L+ PP+ ++  +++Q    ATPS
Sbjct: 114 KVFAFYLLVPIFVVYKAAPLLKMLLQ-QLKNFKNQALNQPPQQQQQQQQQQHQQHATPS 171


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 344 KQTLSTKITTDCFTLQN*RRCIH 276
           +Q L TKI T CF L N ++ +H
Sbjct: 401 RQALLTKIATKCFQLLNKQKSVH 423


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 117 GIHRKQSTALQLCRPALSHSSLQVLVECVI 206
           GI + Q   LQL    +S+ +L V++ CV+
Sbjct: 96  GIRKLQGADLQLSHRVISNQNLYVILACVL 125


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 706 STVLPSCSTILDXTLCYXVSINVSAQVKVMS 798
           S ++P CSTI+   LC    I + ++  V+S
Sbjct: 75  SVIVPDCSTIVHIALCAAYLIVIDSRNTVLS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,368
Number of Sequences: 5004
Number of extensions: 63506
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)