Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B19
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical pr... 55 7e-08
AF324488-1|AAK49909.1| 314|Caenorhabditis elegans B0212.4-like ... 30 1.7
AF045639-4|AAV58895.1| 313|Caenorhabditis elegans Hypothetical ... 30 1.7
AF045639-3|AAL11098.1| 383|Caenorhabditis elegans Hypothetical ... 30 1.7
AF045639-2|AAC02568.2| 382|Caenorhabditis elegans Hypothetical ... 30 1.7
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 29 2.9
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 29 2.9
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 29 2.9
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 29 2.9
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 29 2.9
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 29 2.9
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 29 2.9
Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical pr... 29 5.1
>U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical
protein C26B2.6 protein.
Length = 334
Score = 54.8 bits (126), Expect = 7e-08
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Frame = -1
Query: 642 RXIYETVLXSSGTNMLRLAIHSLGSP----IWMAMDSDDTEFQNYGRDLIMFMYYLRILI 475
+ IYET+ N G P + + + + D E + L F+ LR L
Sbjct: 160 KGIYETLCQIVKENEAHTKSGGRGGPKKNLLRVVLKNIDMEICEDYKFLGRFLCCLRSLA 219
Query: 474 RDXXVAVFITIPSHLYEDPIIMKKVLYSAHNA-VRIESFAGSEKETNPVYKDYHGLFHIT 298
R + V+IT S P ++L SA + +++ F +EK+ HG FH+
Sbjct: 220 RSSYMIVYITANSFRVPKPTW--RILESAADTHIQLMPFDENEKKMFKHLGTAHGYFHLK 277
Query: 297 KLTALYTLVPFVPPSLDLAFKL-KRKKFVIEKLHIPPELEETSEREQD 157
L L ++ PP LDL F+ RK F I +H+PP +E + Q+
Sbjct: 278 SLPRLMSVGTHTPPILDLIFEASSRKGFQIRVMHLPPAFDEPAPGHQN 325
>AF324488-1|AAK49909.1| 314|Caenorhabditis elegans B0212.4-like
protein protein.
Length = 314
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 318 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 151
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 251 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 304
>AF045639-4|AAV58895.1| 313|Caenorhabditis elegans Hypothetical
protein B0212.4c protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 318 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 151
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 250 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 303
>AF045639-3|AAL11098.1| 383|Caenorhabditis elegans Hypothetical
protein B0212.4b protein.
Length = 383
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 318 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 151
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 320 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 373
>AF045639-2|AAC02568.2| 382|Caenorhabditis elegans Hypothetical
protein B0212.4a protein.
Length = 382
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 318 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 151
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 319 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 372
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 215 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 319
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical
protein ZK795.2 protein.
Length = 292
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 270 PFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQ 160
P S+D K+ KF+ IP E ET+ERE+
Sbjct: 146 PKTVKSMDQLIKILEPKFMAPLSRIPDEYPETAEREE 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,314
Number of Sequences: 27780
Number of extensions: 352559
Number of successful extensions: 770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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