Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B19
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.4  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 76  NNSWCIFTLNNNNHESREKMY 14
           NN++  +  NNNN+ + +K+Y
Sbjct: 98  NNNYNNYNYNNNNYNNYKKLY 118


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 97  LTRHVVYNNSWCIFTLNNNNHESR-EKMY 14
           L+   ++NN+   +  NNNN+ +  +K+Y
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 342 TNPVYKDYHGLFHITKLTALYTLV 271
           TN +Y  Y+G  H  +    YT+V
Sbjct: 359 TNYLYLTYNGTVHDVEFPGXYTMV 382


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 97  LTRHVVYNNSWCIFTLNNNNHESR-EKMY 14
           L+   ++NN+   +  NNNN+ +  +K+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 97  LTRHVVYNNSWCIFTLNNNNHESR-EKMY 14
           L+   ++NN+   +  NNNN+ +  +K+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 97  LTRHVVYNNSWCIFTLNNNNHESR-EKMY 14
           L+   ++NN+   +  NNNN+ +  +K+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,053
Number of Sequences: 438
Number of extensions: 4621
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)