Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B17
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...   104   1e-23
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.4  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   4.4  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   7.6  

>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score =  104 bits (249), Expect = 1e-23
 Identities = 57/131 (43%), Positives = 83/131 (63%), Gaps = 6/131 (4%)
 Frame = -3

Query: 499 GYSQSSNANYAESSKDSDSNLLLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMV 320
           G S SS + +A+  ++   +LLL KK W++A  PLKQ+PMN  + YM+GNS+ IF IM  
Sbjct: 50  GNSASSTSIFAKREEELQKDLLL-KKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTT 108

Query: 319 GMLIVRPVKALFATQSTFKMVEGTQ------AIGQKIVYCIGNIVNILLALYKCQSMGLL 158
            ML+V P+KA+ +T S F   +GT       A+G    Y +  ++ + + +YK Q MGLL
Sbjct: 109 LMLLVNPLKAITSTGSAFTPFKGTHPGTLWPAMG---AYILFQLLLMGIGVYKLQRMGLL 165

Query: 157 PTHSSDWLAFE 125
           PT +SDWLA+E
Sbjct: 166 PTTTSDWLAWE 176


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 589 SQLKSNKKLKWALDFNQKNKQLSTE 515
           SQ   N+++KW  DFN K K L  E
Sbjct: 620 SQAALNRRVKWENDFNNKIKALREE 644


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 601 IVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKK 422
           I+  + L S  +  W      +N+  +  +PSPP  SQ       E  K   S +L   K
Sbjct: 264 IIAATPLNSQTQASWVAQ--PENQAYANLIPSPPTTSQILPTELTEEEKQLRSKVLFYLK 321


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 510 PHPQVTVSLQTLIMPNHQKIQT 445
           P PQ+    QT+++  H+++QT
Sbjct: 107 PRPQLNAQEQTMLLVRHRQLQT 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,014
Number of Sequences: 5004
Number of extensions: 57246
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)