Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B16
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   137   5e-34
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   1.3  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    23   9.4  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    23   9.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    23   9.4  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  137 bits (331), Expect = 5e-34
 Identities = 59/82 (71%), Positives = 69/82 (84%)
 Frame = -2

Query: 293 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 114
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 113 TILCQPTGGRARLTEGCXFRRK 48
           ++LCQPTGG+ARL EGC FRRK
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
 Frame = +3

Query: 132 HHSLCVTKNCCNLVTARALNIHEIRVRMWH*PLK------------LMFPPLRRRGRMQQ 275
           +H+L   ++ C L  ++ L+ H I +R W   +K            ++F P+ +  ++Q 
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKWGMDIKTKKNFFFIDGFSMLFAPISKPSKVQA 96

Query: 276 INCERHGYSFNAPI 317
              + H  S  AP+
Sbjct: 97  PETKNHIKSVFAPV 110


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 219 H*PLKLMFPPLRRRGRMQQINCERHGYSFNA 311
           H  LK  +  L   G+MQ+  C++ G  F A
Sbjct: 256 HASLKKTYMRLLNSGKMQKKECDKKGKFFEA 286


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -2

Query: 260 PASERRKHKLKRLVPHPNSYFMDVKCPGCY 171
           P     K       P  N   MD+ CP CY
Sbjct: 82  PVKRAVKEAWDSFEPLSNDQLMDLTCPICY 111


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 125 AGCSTILCQPTGGRAR 78
           A C T LC+  G RAR
Sbjct: 167 ANCFTFLCRALGSRAR 182


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 175 VTRLQQFLVTHREWWSALDAQRSF 104
           V R Q  +V+H+    AL ++RSF
Sbjct: 269 VNRSQSDIVSHKSMRDALQSERSF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,824
Number of Sequences: 5004
Number of extensions: 20241
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)