Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B12
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 231 8e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 114 1e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 99 4e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 7e-21
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 4e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 64 2e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 64 2e-11
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 231 bits (564), Expect = 8e-62
Identities = 109/133 (81%), Positives = 116/133 (87%)
Frame = -1
Query: 590 LTIGNLNEFGRPIRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 411
+TIGN R PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGG
Sbjct: 248 ITIGN-----ERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGG 302
Query: 410 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 231
TTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 TTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 230 DESGPSIVHRKCF 192
DESGP IV+RKCF
Sbjct: 363 DESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 114 bits (274), Expect = 1e-26
Identities = 51/118 (43%), Positives = 80/118 (67%)
Frame = -1
Query: 545 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 366
PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISEL 322
Query: 365 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 192
A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 323 RAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 99.1 bits (236), Expect = 4e-22
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 12/133 (9%)
Frame = -1
Query: 581 GNLNEFGRP-IRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYA 432
G ++FG+ R E LF PSF + G+HE Y SI+ CD ++R L
Sbjct: 286 GVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLN 345
Query: 431 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQ 258
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 257 QMWISKQEYDESG 219
+W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 96.7 bits (230), Expect = 2e-21
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 12/122 (9%)
Frame = -1
Query: 548 CPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 369
CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KE
Sbjct: 257 CPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKE 316
Query: 368 ITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDE 225
I L P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E
Sbjct: 317 IKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEE 376
Query: 224 SG 219
G
Sbjct: 377 YG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 7e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 500 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 321
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 320 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 195
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 4e-13
Identities = 31/116 (26%), Positives = 61/116 (52%)
Frame = -1
Query: 554 IRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 375
IR PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R++
Sbjct: 596 IRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIK 655
Query: 374 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 207
+E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 656 RELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/126 (30%), Positives = 58/126 (46%)
Frame = -1
Query: 575 LNEFGRPIRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 396
LN PE LF PS + + GI E S+ +I+ L N V GG +P
Sbjct: 274 LNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFP 333
Query: 395 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 216
G R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G
Sbjct: 334 GFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGA 392
Query: 215 SIVHRK 198
+I+ RK
Sbjct: 393 NIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 63.7 bits (148), Expect = 2e-11
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Frame = -1
Query: 545 PEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 369
PE F P + + E N + +D+RK LY N VLSGG+T++ +R+Q++
Sbjct: 290 PEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRD 349
Query: 368 ITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 231
+ + + + +I+ ++ +VW GGS+LA F +K +Y
Sbjct: 350 LKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADY 409
Query: 230 DESGPSIVHR 201
+E G SI R
Sbjct: 410 EEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 446 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 276
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 275 SLSTFQQMWISKQEYDESGPSIVHRK 198
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 299 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 198
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 307 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 212
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 374 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 264
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 417 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 238
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 237 GV 232
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 240 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 326
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,963
Number of Sequences: 5004
Number of extensions: 51304
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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