Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B10
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1059 - 30020877-30021539,30022367-30022375 32 0.25
08_02_0910 - 22522465-22522473,22522565-22522651,22522707-225227... 32 0.33
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 31 0.58
02_04_0103 - 19768288-19768737 31 0.77
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 1.8
01_07_0105 - 41104655-41104851,41105818-41107150 29 2.4
02_02_0524 + 11179224-11179469,11179543-11181465 28 4.1
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 5.4
06_01_0137 - 1045301-1047601 28 5.4
06_01_0124 - 958935-959967,959985-961222 28 5.4
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 28 5.4
10_08_0248 + 16161518-16163437 27 7.2
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 27 7.2
05_05_0213 + 23307403-23307573,23308691-23308810 27 9.5
02_02_0319 - 8917042-8917122,8917628-8917680,8917754-8917800,891... 27 9.5
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 3 SLXCHFIRFVSLFC--CILFTVFFIYFLFITLTMFFCPFI 116
SL CH I F SLFC I++ +F IY +I F FI
Sbjct: 129 SLICHCILFRSLFCFRLIIWLMFIIYICYICSHGFTLTFI 168
>08_02_0910 -
22522465-22522473,22522565-22522651,22522707-22522768,
22523170-22523697,22524954-22525047
Length = 259
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -2
Query: 320 LSYLSQWKHDKQNWKFMKVKQLWLLKNKFSTNLVPDE 210
++Y+S + H +KF+K K L L++ + + N++P+E
Sbjct: 209 MNYISGFYHKTHIYKFVKKKNLPLIERELTENVIPNE 245
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 39 FCCILFTVFFIYFLFITLTMFFCPFIHLF 125
F +L T+F + F+ T FF PF+HLF
Sbjct: 1714 FSSLLSTLFCLPVQFLMSTEFFIPFVHLF 1742
>02_04_0103 - 19768288-19768737
Length = 149
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 487 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 383
PM++K R KRKRK K+ KK K + K+++K
Sbjct: 99 PMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKK 133
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = -2
Query: 353 ELSKNQLKSQCLSYLSQWKHDKQNWKFM-KVKQLWLLKNKFSTNLVPDESWQTLIEYFES 177
E K Q+++ + SQ K+ + M + K++ L K+ +L D++ + +E
Sbjct: 517 EEQKLQVQASLAATESQLTEAKKQYDIMLEGKKIELSKHLKELSLKNDQAINEIRRKYEL 576
Query: 176 AKGNVRTLLLEDAKKVIKQMDEWTEKHGQSNKQE 75
K + + E A+K+IK+M+ + N+Q+
Sbjct: 577 EKVEIINIEKEKAEKLIKEMENKCNEKISENRQD 610
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 530 ESKPAAVKRXHVDDSDAEETPRXXXXXKPVITET-TDKKGKKSIRQTKRENYLKRQAQAA 354
E K AV + SD ++T K +T T TD+KG++ + + K+++ ++QA AA
Sbjct: 433 EEKSIAVSKDDDGQSDGKQT----IELKEAMTATKTDEKGEEQVAKDKKDDEQEQQATAA 488
Query: 353 ELSKNQLKSQ 324
+ + + Q
Sbjct: 489 PIESPKQEQQ 498
>02_02_0524 + 11179224-11179469,11179543-11181465
Length = 722
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 517 RQLSDXTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQNFQKI 338
R +D L +P + + K K P L L KKV S+ D+ E+ +LN + + +++
Sbjct: 649 RSAADYDLPSPAVSRRGRRGKTKGPTLASMLKKKVTSK-DRIAER-LLNARARDATIREV 706
Query: 337 N--SNLSVSAIFPS 302
+ ++S FP+
Sbjct: 707 SHTEDMSYREAFPN 720
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = -2
Query: 407 SIRQTKRENYLKRQAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNKF 234
++ + + E+ + R+A+ E++ + + L +S K K +W+F+ + W + N+F
Sbjct: 530 TVAKKEHEDTILRRARLIEVNIKKAGERSLCNISLEKKPKSHWEFVLEEMAW-MANEF 586
>06_01_0137 - 1045301-1047601
Length = 766
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -2
Query: 305 QWKHDKQNWK-FMKVKQ---LWL--LKNKFSTNLVPDESWQTLIEYFESAKGNVRTL 153
QW ++ + + +++VKQ LW L K VP+E+ Q+++EY + G V L
Sbjct: 488 QWVTNRMSRRNYLRVKQYSVLWFCRLPLKLPAAAVPEEAKQSIVEYLAAYDGAVAPL 544
>06_01_0124 - 958935-959967,959985-961222
Length = 756
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -2
Query: 305 QWKHDKQNWK-FMKVKQ---LWL--LKNKFSTNLVPDESWQTLIEYFESAKGNVRTL 153
QW ++ + + +++VKQ LW L K VP+E+ Q+++EY + G V L
Sbjct: 478 QWVTNRMSRRNYLRVKQYSVLWFCRLPLKLPAAAVPEEAKQSIVEYLAAYDGAVAPL 534
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -2
Query: 368 QAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNK 237
Q +L+ + L +Q + L ++K D+++W+ + ++LW ++ K
Sbjct: 408 QELVKKLAGSPLAAQTVGNLLKFKLDEKHWETVNGRKLWQIEQK 451
>10_08_0248 + 16161518-16163437
Length = 639
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 188 YFESAKGNVRTLLLEDAKKVIKQMDEW-TEKHGQSNKQEID 69
+F+ KG RT L+D K + + EW TE SN ++
Sbjct: 557 FFDPMKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVE 597
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 353 ELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNKFSTNLVP 216
+L + L ++ L L + H +WK ++ +LW LK + T+++P
Sbjct: 398 KLKGSPLAAKTLGRLLRMDHHTTHWKNVQKSELWELKQE-ETDILP 442
>05_05_0213 + 23307403-23307573,23308691-23308810
Length = 96
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 106 VHSSICLMTFFASSSNNVRTFPFADSKYSIRVCQDSSGT 222
+ +S+C A+ S N+ PF D K+ +R Q++ T
Sbjct: 42 LRASVCCRCSVAAGSQNIT--PFPDLKFELRTRQEAKNT 78
>02_02_0319 -
8917042-8917122,8917628-8917680,8917754-8917800,
8917901-8917992,8919725-8920060,8920370-8920423,
8920547-8920879,8921133-8921207,8921293-8921441,
8922411-8922429
Length = 412
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/62 (17%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 299 KHD-KQNWKFMKVKQLWLLKNKFSTNLVPDESWQTLIEYFESAKGNVRTLLLEDAKKVIK 123
K+D K++++++ ++ W+ K+ + ++PD + + + + F ++ ++ ED+ +
Sbjct: 48 KYDRKKSYEWLNLRAAWVAKSMPNDIIIPDPTPERVRDAFSEISRSLSNVMAEDSVQCFL 107
Query: 122 QM 117
M
Sbjct: 108 NM 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,588
Number of Sequences: 37544
Number of extensions: 195262
Number of successful extensions: 640
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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