Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B10
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    25   0.64 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.5  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 478 KKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 392
           +KH+  RK ++P   +QL+   K   +KQ
Sbjct: 4   RKHKPNRKPRTPFTTQQLLSLEKKFREKQ 32


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = -2

Query: 344 KNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNKFSTNLVPDESWQTLIEYFESAKGN 165
           KNQ+ +  L     W   K  W+  +   + +L      ++  D  W+  I  + +A GN
Sbjct: 71  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKML------HVPSDHIWRPDIVLYNNADGN 124

Query: 164 VRTLLLEDAKKVIKQMDEWTEKHGQSNKQEID 69
               L   A    + + EW       +  EID
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSCEID 156


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 151 NNVRTFPFADSKYSIR 198
           NN R  P +DS+Y+IR
Sbjct: 813 NNKRLDPKSDSRYTIR 828


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 439 LPKQLIKKVKSRYDKQREKTILNV 368
           LP+ + K+    + K++ KTIL V
Sbjct: 61  LPQPISKRKDKEHKKKKSKTILAV 84



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 184 KYSIRVCQDSSGTKLVENLFLSSHNCLTFMNFQ 282
           KY+      S   +   NL+L  H  L+F +F+
Sbjct: 242 KYTRSFAHQSINKEARSNLYLPFHLTLSFRDFR 274


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 439 LPKQLIKKVKSRYDKQREKTILNV 368
           LP+ + K+    + K++ KTIL V
Sbjct: 61  LPQPISKRKDKEHKKKKSKTILAV 84



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 184 KYSIRVCQDSSGTKLVENLFLSSHNCLTFMNFQ 282
           KY+      S   +   NL+L  H  L+F +F+
Sbjct: 237 KYTRSFAHQSINKEARSNLYLPFHLTLSFRDFR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,103
Number of Sequences: 438
Number of extensions: 2568
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)