Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B09
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 155 8e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 85 9e-18
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 85 1e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 65 1e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 6e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.86
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 155 bits (375), Expect = 8e-39
Identities = 72/86 (83%), Positives = 75/86 (87%)
Frame = -3
Query: 702 DFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 523
DFEQE+ T A SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNS
Sbjct: 222 DFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNS 281
Query: 522 IMKCDVDIRKDLYANTVLSGGTTMXP 445
IMKCDVDIRKDLY N V+SGGTTM P
Sbjct: 282 IMKCDVDIRKDLYGNVVMSGGTTMYP 307
Score = 136 bits (330), Expect = 2e-33
Identities = 62/68 (91%), Positives = 66/68 (97%)
Frame = -1
Query: 443 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 264
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 263 SIVHRKCF 240
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = -3
Query: 702 DFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 523
D E + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++
Sbjct: 222 DLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDT 281
Query: 522 IMKCDVDIRKDLYANTVLSGGTTM 451
I DVDIRK LY VLSGG++M
Sbjct: 282 IQAADVDIRKYLYRAIVLSGGSSM 305
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -1
Query: 389 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 267
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = -3
Query: 702 DFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNS 523
DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+H + S
Sbjct: 227 DFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKS 286
Query: 522 IMKCDVDIRKDLYANTVLSGGTTM 451
I+ D+D+R LY+N VLSGG+T+
Sbjct: 287 ILLSDIDLRSTLYSNIVLSGGSTL 310
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -1
Query: 443 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 264
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 263 SIVHRKCF 240
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = -3
Query: 672 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSI 520
+SS K +E PDG G ERFR E LF PSF + G+HE Y SI
Sbjct: 273 ASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Query: 519 MKCDVDIRKDLYANTVLSGGTTMXP 445
+ CD ++R L N V++GGT++ P
Sbjct: 333 LACDSELRSPLLNNIVVTGGTSLIP 357
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -1
Query: 443 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDES 270
G+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417
Query: 269 G 267
G
Sbjct: 418 G 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -1
Query: 443 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 273
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 272 SGP---SIVHRKC 243
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 35.5 bits (78), Expect(2) = 8e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 549 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 451
GI + N I +CDVDIR L N ++ GGT++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSL 358
Score = 32.7 bits (71), Expect(2) = 8e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 657 EKSYELPDGQVITIGNERFRCPEALFQP 574
E +E PDG + G ER++ PE LF P
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 624 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 451
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T+
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTL 338
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 386 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 249
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = -3
Query: 630 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 451
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 450 XP 445
P
Sbjct: 332 FP 333
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -3
Query: 609 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMXP 445
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG P
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLP 648
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -1
Query: 443 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 264
G+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Query: 263 SIV 255
+
Sbjct: 709 EYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 443 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 273
G A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603
Query: 272 SGPSIVHRK 246
G ++ K
Sbjct: 604 LGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 347 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 246
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 355 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 260
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 422 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 312
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,409
Number of Sequences: 5004
Number of extensions: 58298
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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