Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B07
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.0  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   4.1  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   7.2  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 226 FELNLINLFLNYSSSCLKLIVTDHDLV*KYYIYKHYLCL 342
           F LN++N ++  + S L+L+ +   L    Y  KHY  L
Sbjct: 398 FTLNIMNAYVYANESLLQLLQSSQSLYAHLYSLKHYFFL 436


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 491 FCTKRFLHDLKKKKMWKNCNDDLK 562
           F  + FLH L  ++ W+  +DDL+
Sbjct: 446 FTRQLFLHKLTSREWWEKLSDDLR 469


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 566 STLNHHYNF--STFFFFSNHVKNV 501
           S   HHY++  +T+F+ S H+K V
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKV 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,266
Number of Sequences: 5004
Number of extensions: 31949
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)