Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B06
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 1e-05
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 37 7e-04
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 34 0.005
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 0.78
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 2.4
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 24 7.3
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 24 7.3
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 23 9.6
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 23 9.6
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 23 9.6
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 42.7 bits (96), Expect = 1e-05
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 336 MNHSCEASAAA--VRVFTRHRDXRLPLVVLFATRDIHPGEPLTFDYGDKFWAIKAKWMRC 163
+NHSC + A +RV + + +V++A RDI GE LT+DY KF +A + C
Sbjct: 858 INHSCAPNCIARIIRVEGKRK------IVIYADRDIMHGEELTYDY--KF-PEEADKIPC 908
Query: 162 ECGAPDCR 139
CGAP CR
Sbjct: 909 LCGAPTCR 916
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 37.1 bits (82), Expect = 7e-04
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Frame = -1
Query: 333 NHSCEASAAAVRVFTRHRDXRLPLVVLFATRDIHPGEPLTFDY-GDKFWA---------- 187
NHSC + A H + + FA +DI P E LTFDY G K ++
Sbjct: 409 NHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQN 468
Query: 186 -IKAKWMRCECGAPDCR 139
I +C+CG+ +CR
Sbjct: 469 RISKLRRQCKCGSANCR 485
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 34.3 bits (75), Expect = 0.005
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 255 LFATRDIHPGEPLTFDYGDKFWAIKAKWMRCECGAPDCRYPVKGGSNNDSN*TLLE 88
+F RDI GE LTFDY + +A+ C CG P C + G + ++ L E
Sbjct: 280 IFCKRDIIRGEELTFDYNVDRYGAQAQ--PCYCGEPCCVGYIGGKTQTEAQSKLPE 333
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 0.78
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 255 LFATRDIHPGEPLTFDYGDKFWAIKAKWMRCECGAPDC 142
L RDI PGE +T Y ++ ++ CEC C
Sbjct: 204 LRCVRDIKPGEEITTFYSSNYFGLE----NCECLCVSC 237
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 256 DDERQTXVAVAGEHADGGRARLAAVV 333
DD R V +AGE RA L A++
Sbjct: 151 DDPRNISVPLAGEEQTNNRAELQAII 176
>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 327 SCEASAAAVRVFTRHRDXRLPLVVLFATRDIHPGEPLTF 211
S E++ V V R + + AT+D+HP + L+F
Sbjct: 24 SGESALEVVPVINRLLENDYKWDTVIATKDVHPKDHLSF 62
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 252 FATRDIHPGEPLTFDYGDKFWAIKAKW 172
FA+ D+ G LTF +G F A W
Sbjct: 87 FASLDVVSGVRLTFSWGISFGGPAAYW 113
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 220 RFSWVYVPG 246
+F+WVYVPG
Sbjct: 60 KFNWVYVPG 68
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +1
Query: 130 HRIPAVGSAALASHPLRFYCPKFVAVVKXERFSWVYVPGREQDDERQTXVAVAGEHADGG 309
H + +G A L S +C ++ E +W+ R+ + +A+ G H +
Sbjct: 260 HSVAKLGWAGLCSK----FCEIVSSIPDSEPLNWMLPCWRDVMHDTPLTLAIKGNHVEAL 315
Query: 310 RARLAA 327
A L+A
Sbjct: 316 HALLSA 321
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 261 VVLFATRDIHPGEPLTFDYGD 199
+ + ATRDI GE L YG+
Sbjct: 276 LTMIATRDIKKGEQLWNTYGE 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,684
Number of Sequences: 5004
Number of extensions: 15637
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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