Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B05
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    27   7.3  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    27   7.3  
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    27   9.7  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    27   9.7  

>Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.2 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 235 LGEQEASKLVTTFLNENWKFVMDTF 161
           +GE + SK V+T   EN   VMD+F
Sbjct: 207 MGEMDLSKCVSTITAENLTVVMDSF 231


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 270 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 154
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 270 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 154
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 270 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 154
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 346 YAQKRDDGEIYMKCDYSKIKYDYQ 275
           Y  K++D EI+  CDY++   D Q
Sbjct: 361 YLAKKEDMEIFPLCDYTQCTVDVQ 384


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 346 YAQKRDDGEIYMKCDYSKIKYDYQ 275
           Y  K++D EI+  CDY++   D Q
Sbjct: 361 YLAKKEDMEIFPLCDYTQCTVDVQ 384


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 189 KIGSSSWILLEEVSLIKPWIFSTATPRNFSARYPLSIILRMTLHRLPNL 43
           +IG+S   L  E + I   IF   T    SARY  +  LR     +PNL
Sbjct: 444 QIGTSVMSLFTEATGIMEHIFKCLTHPLASARYAAAWCLRCIATAVPNL 492


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 475 RPIYKVFSESPLIKNLLGGTTVHGEGNGKVQLEKLQISMK 356
           + IYK F  S  +  ++GG  ++GEG+        Q+  +
Sbjct: 3   KDIYKTFKRS--VSGIVGGNNINGEGSSSPSTSAPQVKYR 40


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 475 RPIYKVFSESPLIKNLLGGTTVHGEGNGKVQLEKLQISMK 356
           + IYK F  S  +  ++GG  ++GEG+        Q+  +
Sbjct: 3   KDIYKTFKRS--VSGIVGGNNINGEGSSSPSTSAPQVKYR 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,942
Number of Sequences: 27780
Number of extensions: 233745
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)