Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B03
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    28   0.95 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   5.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   6.7  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   6.7  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   8.9  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 374 VRPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 487
           +RP PH    PD    K     H   FPR   H+  +P
Sbjct: 376 LRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKP 413



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 377 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 487
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 182 RPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKP 218



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 377 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 487
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 267 RPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKP 303



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 377 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 487
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 294 RPIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKP 330


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 251 ATSYTMNSLYSSVLFSALSTGVPSGT---MSPSGNSLFIFGSGSVRPTPHTECVPDGALE 421
           + +YT  S + + LF   S   P  T   ++  GN      S   RP P T   P G+L 
Sbjct: 111 SAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDS--FRPLPETPVSPGGSLV 168

Query: 422 KP 427
            P
Sbjct: 169 HP 170


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +2

Query: 281 SSVLFSALSTGVPSG-TMSPSGNSLFI----FGSGSVRPTPHTECVPDGALEKPSALTHS 445
           SS L +  S+ +PS  T+  S +SL +      S S  P P +  +        S +THS
Sbjct: 660 SSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHS 719

Query: 446 FIFPRATSHSNMRPTGL 496
            +   A S S+  PT +
Sbjct: 720 SLSLTAMSSSSAIPTSV 736


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 296 SALSTGVPSGTMSPSGNSLFIFGSGSVRPT-PHTECVPDGALEKPSALTHSFIFPRATSH 472
           S+++T  PS   + S  S   F   S+  T P        ++     LTHS++ P   SH
Sbjct: 274 SSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSH 333

Query: 473 SNMRPTG 493
                +G
Sbjct: 334 KYSLSSG 340


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 103 QTEQHEIFSNITSSITLLLNRMTYE*KENNM*LLSVIESH 222
           Q E+H++++ +TS++  +      + +EN   LL + ESH
Sbjct: 605 QREKHKLYAQLTSNVDAIPPANDLQNQENG--LLLITESH 642


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 106 FVDE*PQIMFYEDLKKNFFLYFFCQLYPRKK 14
           F D+   + F E+LKK  + Y   + +P KK
Sbjct: 162 FTDQELDVEFIENLKKVIYRYVHSKSFPPKK 192


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 313 RPERHNESVGQFLIHFRVRLSSTDAPHGMRAGRGFRETFSID 438
           + E+HN SV  F+     RL S       R  + FRE   I+
Sbjct: 130 KSEKHNSSVINFIYEKNERLWSDPFVSSQRLRKQFRERKKIE 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,959
Number of Sequences: 5004
Number of extensions: 37360
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)