Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_B03
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748...   100   8e-22
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179...    96   2e-20
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315...    87   1e-17
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    48   4e-06
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971...    31   0.42 
01_03_0150 + 13220224-13220468,13221903-13222124,13222164-132223...    27   6.8  

>07_03_0061 + 12972944-12973054,12974509-12974536,12974701-12974870,
            12975878-12976043,12976122-12976425,12977155-12977350,
            12977464-12977622,12978311-12978371,12978904-12978967,
            12979099-12979346,12980039-12980250,12980344-12980456,
            12980547-12980623,12980710-12980873,12981493-12981564,
            12981565-12981760,12981813-12981854,12982358-12982440,
            12982534-12982671,12982942-12983124,12983216-12983263
          Length = 944

 Score =  100 bits (239), Expect = 8e-22
 Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
 Frame = -1

Query: 516  YCCTTRXNPVGLMLLCEVALGNMKECVNAEGFSKAPSGTHSVWGVGRTEPDPKMNKELPD 337
            YC   R NPVGLMLL EVALG+M E   A    K P G HS  G+G+T P      +  D
Sbjct: 839  YCYVDRKNPVGLMLLSEVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFAKWRD 898

Query: 336  GLIVPLGTPVDRA-ENSTLLYNEFIVYDVAQVKVKYLIEMRFDYR 205
             ++VP G PV  + + S L+YNE+IVY+ +QVK++YL+++RF ++
Sbjct: 899  DVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHHK 943


>01_03_0231 +
           14014243-14014390,14015053-14015141,14017859-14017949,
           14018088-14018215,14018703-14018784,14019022-14019081,
           14019160-14019251,14019342-14019462,14019873-14019928,
           14020193-14020272,14020774-14020820,14020940-14020989,
           14021304-14021366,14021515-14021595,14021703-14021717,
           14021875-14021985,14022072-14022147,14022350-14022492,
           14022721-14022794,14023364-14023454,14023589-14023687
          Length = 598

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 44/105 (41%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = -1

Query: 516 YCCTTRXNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVWGVGRTEPDPKMNKELP 340
           YCC +     G+MLLCEVALG M E +  + G    P+G  S  GVG+TEP+   +K   
Sbjct: 495 YCCASEACKSGVMLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITD 554

Query: 339 DGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMRFDYR 205
           DG+++PLG P    E  +L+YNE+IVY+V Q++++Y++ + F+++
Sbjct: 555 DGMVIPLGKP----EKGSLMYNEYIVYNVDQIRMRYILNVNFNFK 595


>01_03_0232 +
           14030821-14030904,14031029-14031374,14031475-14031599,
           14031927-14032023,14032459-14032691,14032765-14032885,
           14033319-14033374,14033630-14033703,14034193-14034239,
           14034458-14034507,14034860-14034922,14035160-14035240,
           14035517-14035627,14035714-14035789,14036216-14036358,
           14036775-14036848,14037304-14037409,14037492-14037547,
           14038272-14038378,14041150-14041598
          Length = 832

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = -1

Query: 516 YCCTTRXNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVWGVGRTEPDPKMNKELP 340
           YC  +     G++LLCEVALG M E +NA+   +  P G  S  GVG+TEP+   +K   
Sbjct: 553 YCYASEACRSGVLLLCEVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITD 612

Query: 339 DGLIVPLGTP-VDRAENSTLLYNEFIVYDVAQVKVKYLIEM 220
           DG++VPLG P  + ++  +LLYNEFIVY+V Q++++   E+
Sbjct: 613 DGVVVPLGKPKAEPSKRGSLLYNEFIVYNVDQIRMRLSKEL 653


>02_04_0080 - 19529575-19529643,19529756-19529938,19530061-19530210,
            19530297-19530379,19530497-19530599,19530709-19530918,
            19531023-19531183,19531275-19531351,19531483-19531610,
            19531695-19531935,19532047-19532180,19532261-19532435,
            19532587-19532656,19532746-19532803,19532887-19532994,
            19533088-19533283,19533381-19533727,19534008-19534034,
            19534334-19534336
          Length = 840

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
 Frame = -1

Query: 516  YCCTTRXNPVGLMLLCEVALGN-MKECVNAEG---FSKAPSGTHSVWGVGRTEPDPKMNK 349
            Y  T    P G ++L   +LG  ++E     G     +       V GVGR   DP  + 
Sbjct: 724  YGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHF 783

Query: 348  ELPDGLIVPLGTPVDRA-ENSTLLYNEFIVYDVAQVKVKYLIEMRFD 211
               DG+ VP G  V    ++  L YNE+ VYD  QV + +L+ ++++
Sbjct: 784  TWRDGVTVPCGKLVPSTNKDGPLEYNEYAVYDPKQVSIAFLVGVKYE 830


>11_06_0724 -
           26696401-26696703,26696875-26697025,26697115-26697184,
           26697526-26697736,26697928-26698085,26698684-26699500
          Length = 569

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 194 CNYYL*SNLISIRYFTLT*ATSYTMNSLYSSVLFSALSTGVPSGTMSPSGNSLFIFGSGS 373
           C ++L   +++ + + +  ++ YT NS+Y S L S LS+     +   S  +LF  GS  
Sbjct: 12  CFFFLPMPMVAAQPWMICGSSKYTANSIYQSNLDSLLSSSFLVVSGDSSSGALFAKGSRG 71

Query: 374 VRP 382
             P
Sbjct: 72  AAP 74


>01_03_0150 +
           13220224-13220468,13221903-13222124,13222164-13222376,
           13222549-13222691,13225813-13226387,13226776-13227155,
           13227256-13227342,13227469-13227799,13227880-13228290,
           13228373-13228432,13228561-13228761
          Length = 955

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 385 APHGMRAGRGFRETFSIDTLLHIPESDLTQQHEADGVVSGG 507
           APH +R G G R T +      +  S   Q+   DGV +GG
Sbjct: 162 APHQLRGGGGGRTTTAWTAAEVVWRSGRRQRSSGDGVDNGG 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,580
Number of Sequences: 37544
Number of extensions: 247015
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)