Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_B03
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 73 2e-13
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 73 2e-13
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 38 0.006
U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 29 1.5
AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical ... 27 6.0
AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical ... 27 6.0
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 27 6.0
Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Frame = -1
Query: 516 YCCTTRXNPVGLMLLCEVALGNMKECVNAEGFSKA--PSGTHSVWGVGRTEPDPKMNKEL 343
+ C +LLC+VALGN+++ + ++ S+ P+G SV G+GR P +
Sbjct: 832 FYCRANAKEEAYLLLCDVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNH 891
Query: 342 PDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQVKVKYLIEMRFDY 208
PDG +PLG + + LLYNEFIVYDV Q+++KYL+ ++ +
Sbjct: 892 PDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLVRVKMHH 941
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 1 protein.
Length = 945
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Frame = -1
Query: 516 YCCTTRXNPVGLMLLCEVALGNMKECVNAEGFSKA--PSGTHSVWGVGRTEPDPKMNKEL 343
+ C +LLC+VALGN+++ + ++ S+ P+G SV G+GR P +
Sbjct: 832 FYCRANAKEEAYLLLCDVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNH 891
Query: 342 PDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQVKVKYLIEMRFDY 208
PDG +PLG + + LLYNEFIVYDV Q+++KYL+ ++ +
Sbjct: 892 PDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLVRVKMHH 941
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 37.5 bits (83), Expect = 0.006
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = -1
Query: 516 YCCTTRXNPVGLMLLCEVALGN----MKECVNAEGFSKAPSGTHSVWGVGRTEPDPKMNK 349
YCC V MLLCEV N + ++A+ + T SV+ G+ P +
Sbjct: 429 YCCPEASKRV-FMLLCEVETANPLVLYESEIDADEKMEKAKKT-SVYAAGKHTPRDTV-- 484
Query: 348 ELPDGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMRFD 211
E+ +G+ E + LLY+E+++++ K+KY++E++ D
Sbjct: 485 EI-NGIPAFKSNLETIEEETRLLYDEYVMFNKEHFKIKYVVEVKVD 529
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 37.5 bits (83), Expect = 0.006
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = -1
Query: 516 YCCTTRXNPVGLMLLCEVALGN----MKECVNAEGFSKAPSGTHSVWGVGRTEPDPKMNK 349
YCC V MLLCEV N + ++A+ + T SV+ G+ P +
Sbjct: 429 YCCPEASKRV-FMLLCEVETANPLVLYESEIDADEKMEKAKKT-SVYAAGKHTPRDTV-- 484
Query: 348 ELPDGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMRFD 211
E+ +G+ E + LLY+E+++++ K+KY++E++ D
Sbjct: 485 EI-NGIPAFKSNLETIEEETRLLYDEYVMFNKEHFKIKYVVEVKVD 529
>U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical
protein R03H10.7 protein.
Length = 353
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 319 ERHNESVGQFLIHFRVRLSSTDAPHGMRAGRGFRET-FSIDTL---LHIPESDLTQQH 480
E ESV F IH RV L T PH + F T F+ DT+ PE+D+ Q+
Sbjct: 118 ENLKESVNYFKIHGRVTLMDTRPPHHYQKRFNFEITDFNGDTIACSASSPEADVFYQN 175
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 308 TGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHSFIFPRA 463
T +P+ T S S +FG+ +V TP + PDG + S +T S + A
Sbjct: 20 TSLPT-TTSVLDKSRSLFGNSAVISTPARDSTPDGHIVDSSVITKSSVIIEA 70
>AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical
protein ZC178.2 protein.
Length = 1459
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +2
Query: 239 TLT*ATSYTMNSLYSSVLFSALS-TGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGA 415
T+T T S+V SA S T S T + G S S S P P + +
Sbjct: 1026 TMTVPNDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVSSDSTTPGPSSTATNSAS 1085
Query: 416 LEKPSALTHSF 448
E P +H F
Sbjct: 1086 CETPFVYSHKF 1096
>AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical
protein Y82E9BL.15 protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 205 SVIES-HFNQVFHFDLSHVVHDELVVQQRAVLRPVDG 312
SVI+S H Q+FHF+ V D+ V+ +R V G
Sbjct: 234 SVIDSNHMEQLFHFEEFLVNLDDFSVEHAVQIRDVSG 270
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 429 EGFSKAPSGTHSVWGVGRTEPDPKMN 352
E F+KA S+W RT DP +N
Sbjct: 292 EVFAKAKKANISIWNYVRTSADPSLN 317
>Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical
protein C34C12.3 protein.
Length = 331
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 341 GNSLFIFG-SGSVRPTPHTECVPDGALEKP 427
GN+ +F G+ R T + VPDG+ EKP
Sbjct: 293 GNAAAVFEIDGNNRSTKYFNAVPDGSREKP 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,840
Number of Sequences: 27780
Number of extensions: 221815
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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