Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_A16
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 61 8e-11
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 0.93
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 2.2
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 3.8
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 3.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 5.0
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 5.0
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 5.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 5.0
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 5.0
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 5.0
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 6.6
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.7
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 8.7
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 60.9 bits (141), Expect = 8e-11
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Frame = -2
Query: 373 NDDVTYYKLKSESIKKASMPQRQVQQLD----------RIVQNFKPVSDHPHNIDYQERK 224
NDD Y ++ + AS P+R+VQ +D + + + N+ + +
Sbjct: 127 NDD--YRRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNV---KPR 181
Query: 223 KAEG-KKARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNP 47
EG K +R + +L++LF FE ++Y+ +K L++ +QP VYLKE+L + N R P
Sbjct: 182 TGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGP 241
Query: 46 HKNMWELKPEXR 11
+ + LKPE +
Sbjct: 242 YALKYSLKPEYK 253
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.5 bits (58), Expect = 0.93
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 280 QNFKPVSDHPHNIDYQERKKAEGK-KARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQP 104
+N + V +HP+ D +++KK K K + +N F + Y + K+T +
Sbjct: 377 RNNQTVGEHPYVDDNKKKKKGPAKPKEKATLGKTVNSFFGSHSTSNYSKVPLSAKLTGEK 436
Query: 103 IVYLKEILK 77
L +LK
Sbjct: 437 SDDLSNLLK 445
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -2
Query: 205 ARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVYLKEILKEVCNYN 59
A+D + V N+ F+ EKH++ D +P+V +E+++E C N
Sbjct: 683 AKDSTKGV-NLQFSK-EKHEFTAESDDTTSYDEPLVSFRELVEEFCAEN 729
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 49 DFLNCNYRPLSEFLSNI 99
D+LN NYRP E L+N+
Sbjct: 660 DYLNKNYRPQLESLNNL 676
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 403 RIVQXLECRPNDDVTYYKLKSESIKKASMPQRQVQQLD 290
R Q + PN T K+KSE ++ M Q++ +QLD
Sbjct: 558 RTTQQPKSTPNH--TNIKVKSERLQHVRMAQQKAEQLD 593
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 253 PHNIDYQERKKAEGKKARDDKEAVLN-MLFAAFEKHQYYNIKDLQKI 116
P N ++ +KK+ GK +LN ++ F HQY +KD +K+
Sbjct: 873 PENFEF--KKKSGGKVFISYPCVMLNHLVHEKFTNHQYSALKDPEKL 917
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 403 RIVQXLECRPNDDVTYYKLKSESIKKASMPQRQVQQL-DRIVQNFKPVSDHPHNIDYQER 227
+I + LE D Y L+ + S ++ L + ++N KPV NI+ QE+
Sbjct: 37 QIDEPLEILEGDHTQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENINPQEK 96
Query: 226 K 224
K
Sbjct: 97 K 97
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 157 EKHQYYNIKDLQKITRQPIVYLKEILKEVCNYNLRNPHKN 38
++ Y I L+KI P + +E L +YN +P K+
Sbjct: 585 KRQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGDPEKS 624
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 226 KKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLQKITRQPIVY 95
++A+ +++ DK + N L EK++YY D + + VY
Sbjct: 155 RRADQYRSQKDKILLANSLDFMLEKYRYYKKIDAVYLRKADAVY 198
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 343 SESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQER 227
SES+ +S+ + + + R+++N K DH Y ER
Sbjct: 6 SESVSFSSISKEEDTPIARLLKNAKETPDHRFISVYNER 44
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 217 EGKKARDDKEAVLNMLFAAFEKHQYYNIKDLQK 119
E K+ ++ +L ++ HQYY I DL+K
Sbjct: 90 EKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKK 122
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 65 ITDLFQNFFQIYYWLSGDLLKI 130
+T F FF IY W G LL I
Sbjct: 471 VTLSFAGFFTIYLWTLGRLLHI 492
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 280 QNFKPVSDHPHNIDYQERKKAEGKKARDD 194
Q+ K + + DYQ++ K GKK +++
Sbjct: 69 QSVKQTAKDAKDTDYQQKAKDAGKKIKEE 97
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -2
Query: 358 YYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHP 251
+ ++ SE K AS +R ++++ +++ + PV+ HP
Sbjct: 461 FKQIYSEQHKPASFKRRVLRRIKQLLFSVTPVALHP 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,040
Number of Sequences: 5004
Number of extensions: 33106
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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