Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A10
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   1.2  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   2.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 332 QFSFSFTGGRTSCKSTLVGTTTLPISAVKQ 243
           QFSF+FT   T  K+ L+   T    AVKQ
Sbjct: 722 QFSFNFTKPNTDAKTNLLPEKTFNEEAVKQ 751


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +1

Query: 142 GHLQRKCATHLEI*VLRSQYSYNGCHT-LQTETHYCFTAEIGRVVVPTSVDLQEVLPPVK 318
           G LQ + A H E    R + +  GC   + T T   F  +I ++++ T V   EV  P K
Sbjct: 220 GLLQPEIAWHTE----RDRIAEAGCFLGMLTGTLAKFATDI-KLLMQTEV--AEVFEPFK 272

Query: 319 LNENC-----QFYNPIECIYVRRS 375
            N        Q  NPI C+Y+  S
Sbjct: 273 ANRGSSSTMPQKRNPISCVYITAS 296


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 286 VDLQEVLPP-VKLNENCQFYNPIECIYVRRSMYKTHIVFTFLVKSLEF 426
           + +Q++ PP +K +EN  F +    I VRR      I+  F   S +F
Sbjct: 147 LSMQDLAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILPNFKALSADF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,207
Number of Sequences: 5004
Number of extensions: 40941
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)