Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A10
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.19 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.19 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 222  SSNRNALLLHSRNRQGGGAYQCGLT-RXXXXXXXXXELSIL*SDRMHLCKAFNV*NSYCL 398
            SS  +++LLH ++   GGA   G T           EL +      H  K     N+Y L
Sbjct: 1414 SSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQL 1473

Query: 399  YISS 410
            Y++S
Sbjct: 1474 YLTS 1477



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 207 QRLPHSSNRNALL-LHSRNRQGGGAYQCGLTR 299
           ++LP +  ++ LL L+  NR+  G YQC + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 222  SSNRNALLLHSRNRQGGGAYQCGLT-RXXXXXXXXXELSIL*SDRMHLCKAFNV*NSYCL 398
            SS  +++LLH ++   GGA   G T           EL +      H  K     N+Y L
Sbjct: 1410 SSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQL 1469

Query: 399  YISS 410
            Y++S
Sbjct: 1470 YLTS 1473



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 207 QRLPHSSNRNALL-LHSRNRQGGGAYQCGLTR 299
           ++LP +  ++ LL L+  NR+  G YQC + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 379 TLNALHKCILSDYKIDN 329
           TLN +HK    DY  DN
Sbjct: 35  TLNVIHKWKYLDYDFDN 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,603
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)