Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A09
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    50   2e-08
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = -1

Query: 422 ACVLVALCSGAPQQNPQ--------DVQILRFDSNVEPDG-YSFAYETSDGTSRQEEGKL 270
           A V V LC+ A    PQ        D  I      V  DG Y   +ETS+G S QE G+ 
Sbjct: 1   ALVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQP 60

Query: 269 DNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTS 144
               +E   ++  G  +Y APDG+  ++T+ A  NGFQ + S
Sbjct: 61  KQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQGS 101


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 406 PFAQVLHNKIPKMFRSYVLTATWNPMATA 320
           P+++    +I K   SY+    +NP A A
Sbjct: 88  PYSETRFEEIKKEVSSYIKKIGYNPAAVA 116


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 406 PFAQVLHNKIPKMFRSYVLTATWNPMATA 320
           P+++    +I K   SY+    +NP A A
Sbjct: 104 PYSETRFEEIKKEVSSYIKKIGYNPAAVA 132


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 406 PFAQVLHNKIPKMFRSYVLTATWNPMATA 320
           P+++    +I K   SY+    +NP A A
Sbjct: 161 PYSETRFEEIKKEVSSYIKKIGYNPAAVA 189


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = -3

Query: 555 ECKTTASTYLIRLTIGNLNEFGRPMI 478
           +C+   + +++   +G +N F  P+I
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVI 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,931
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)