Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A07
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...   153   1e-38
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   1.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   4.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.4  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  153 bits (371), Expect = 1e-38
 Identities = 77/125 (61%), Positives = 90/125 (72%)
 Frame = -2

Query: 409 PVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRSGLALKNFIDVG 230
           P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPRSGLA K+ ID G
Sbjct: 15  PTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTG 74

Query: 229 AGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQRGDGG 50
           AGVID DYRG+V V+LFN+SD DF +K GDRIAQLI E+I  P +  V +L  T RG  G
Sbjct: 75  AGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLEATVRGANG 134

Query: 49  FGSTG 35
           FGSTG
Sbjct: 135 FGSTG 139


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 36  PVEPNPPSPL*VTDKLATSCNTG 104
           PVEP+PPSP  +   + TS +TG
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTG 252


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 332 FASSRNSVIICTH*IDPSCFFRASDWL 412
           F SSR+ V+ CT  +     F A DW+
Sbjct: 331 FTSSRHVVLFCTDIVARGLDFPAVDWV 357


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 143 SFFHTKICVRVIKKNNSNITSIVLINNTGTNINE 244
           SF   +  VRV+   N  +T +V ++NT  ++N+
Sbjct: 350 SFQQLQELVRVVLHENGRVTRLVDVSNTLDDLNK 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,895
Number of Sequences: 5004
Number of extensions: 29352
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)