Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A06
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 265 IREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTFTKTEEK 101
           +R FD +  F    YS     T     +   +H+S K+ L  D   CTF     K
Sbjct: 77  LRLFDKIRVFLDEDYSSAEHFTAL--GNFYFVHESLKNVLLWDFQECTFISVNGK 129


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 395 LIRNQHVVENASLLCLRHFSFGGD 324
           +IR   V ++   LC+ + S GG+
Sbjct: 273 IIREARVEDSGKYLCIVNNSVGGE 296


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 196 YFCAHDAVIHQSCKDE 149
           + C H+ V+H+  K E
Sbjct: 23  HHCHHNGVVHRDLKPE 38


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 149 AEHRHPCMYLYQNRRKT*HNLHS 81
           A+H+   + +YQN   + H L S
Sbjct: 204 ADHKGDALIVYQNADDSFHRLTS 226



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 398 ELIRNQHVVEN 366
           ELIRN H V N
Sbjct: 407 ELIRNTHCVNN 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,034
Number of Sequences: 438
Number of extensions: 2276
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)