Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_A05
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...   168   2e-42
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    84   5e-17
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z81061-1|CAB02934.3|  436|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score =  168 bits (409), Expect = 2e-42
 Identities = 78/137 (56%), Positives = 102/137 (74%)
 Frame = -1

Query: 535 IXYGIPFPMSDEAQSKDFVLPIGKXKVEREGRHITXVCAGRGTDTALKAAEQLAGSKGIE 356
           I YG  FP+ DE  S DFV+PIGK K+ER G H+T V   RG + +L+AA+QL    G+ 
Sbjct: 196 ILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAI-GVS 254

Query: 355 CEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPV 176
            EV+NLR++RP DF++I +S+ KTHHL++VE GWP +GIG+EI A+VMES  F +LDAP+
Sbjct: 255 AEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPL 314

Query: 175 WRVCGADVPMPYARTLE 125
            RV G DVPMPY +TLE
Sbjct: 315 LRVTGVDVPMPYTQTLE 331


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 42/123 (34%), Positives = 68/123 (55%)
 Frame = -1

Query: 508 SDEAQSKDFVLPIGKXKVEREGRHITXVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTI 329
           S++  + D+ +P+G+ +  R G+ +T V  G     AL+AA+        + EV++L+TI
Sbjct: 222 SEDVPTGDYTIPLGQAETVRSGKDLTLVAWGTQVHVALEAAQLAKEKLNADVEVIDLQTI 281

Query: 328 RPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWRVCGADVP 149
           +P D D +  S+ KT  LI   +    SG GAEI A  ++   F  L++P+ RV G D P
Sbjct: 282 QPWDEDHVVESVQKTGRLIVTHEAPISSGFGAEI-ASTVQKRCFLNLESPIDRVAGFDTP 340

Query: 148 MPY 140
            P+
Sbjct: 341 FPH 343


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = -1

Query: 472 IGKXKVEREGRHITXVCAGRGTDT--ALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIAR 299
           IG+ KV ++      V  G G     +LKAAE+L   +GI   V++  TI+P+D  TIA 
Sbjct: 487 IGQAKVVKQSAQDKIVLVGSGVTLYESLKAAEELE-KEGIHATVIDPFTIKPLDGKTIAE 545

Query: 298 SIAKT-HHLITVEQGWPQSGIGAEICARVMESPS 200
              K    ++T E  +   GIG  + A + + P+
Sbjct: 546 HALKVGGRVVTTEDHYAAGGIGEAVSAALADYPT 579


>Z81061-1|CAB02934.3|  436|Caenorhabditis elegans Hypothetical
           protein F14H8.1 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 344 YYFTFYTLASSQLFSGLERGVGASSSAHXRDMPTL 448
           ++FT +TL+ ++++ G+   V  + S   +DM  L
Sbjct: 323 FHFTNFTLSLNEMYPGMSDTVAPTDSRRRKDMKAL 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,360,819
Number of Sequences: 27780
Number of extensions: 178934
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)