Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P24
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    27   0.22 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.67 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.3  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 471 DEKPEEIITAARRRMNHELGIPLDQLDPE----LFTFMTRVHY 587
           D + E IIT + RRM   L + +  LDP     LF  MT  H+
Sbjct: 34  DLQTEMIITKSGRRMFPALNLKITDLDPSADYCLFLEMTLAHH 76


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 659 LNVALEEQYVVDLVFAPHSITRVVIVHAGHERKQFRVQLI*WDSQFMVHPTSGCRYDF 486
           + V L ++ ++D+V    S +  +  H  H++    +  + + +Q  +HP    RY F
Sbjct: 110 VEVCLGDEVIIDVVNHLSSDSTTIHWHGHHQKNSPYMDGVPFVTQCPIHPGMTFRYHF 167


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 395 SEEIK-PKSNISRLLHKCLLQPSTVHR*--EARGNHNGSQT*DEP*TG 529
           SEE+K PK+ I+    +  L   ++ R   ++RG HN S++  +P TG
Sbjct: 175 SEELKIPKAKINTGKTQYNLNSKSLPRQYSQSRGRHNQSRSKRQPKTG 222


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 646 WKNSMWXISCSPHTP 602
           WK SM    C P+TP
Sbjct: 472 WKPSMHGGVCDPYTP 486


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 169 NLFSTLRVLHSDLVSFL 119
           N+F  L++L++D+V+ L
Sbjct: 352 NVFDVLKLLYNDIVNML 368


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 462 VDGCSKHLCSNRD 424
           VDGC KH   N D
Sbjct: 147 VDGCQKHPLCNDD 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,447
Number of Sequences: 336
Number of extensions: 4146
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)