Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P20
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 262 KRSHCSLLWTITSTGNSQNCSCD 330
           K   C++LW   ST N     CD
Sbjct: 187 KEDFCAVLWKDKSTDNEGVSDCD 209


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
 Frame = -1

Query: 256 LFFFHSNSLLYCYLIKRI-H*VLHPICDYT--RLVW------LHTNFYSIVDNSLNANKN 104
           L  FH  S L  + +K +    +    D T  R VW      L T FY+  +N++++   
Sbjct: 377 LITFHIGSQLVLHTVKTVLKTTMSTFSDITFMRTVWKFFNIFLITPFYNFNENTIHSKLC 436

Query: 103 TRHFSFN*YLKGVIIKGLNINEN 35
             + +F   LK V I  L  NEN
Sbjct: 437 KLYATFLIALKLVWIVALFKNEN 459


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 378 SYSAPATST*IARSAPIARAVLRVSCAC--DGPQETAMTS 265
           +++AP+TST + R   I +     S A   DG Q T + S
Sbjct: 35  NFAAPSTSTAVQRPQAILQVRPSTSAAADVDGWQVTPLPS 74


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 307 NSQNCSCDGCRSSYSC 354
           N+ +CS + CR++ SC
Sbjct: 106 NTDDCSPNPCRNNGSC 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,262
Number of Sequences: 336
Number of extensions: 3667
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)