Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P20
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 199 4e-52
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.23
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.23
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 29 0.70
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.8
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.7
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.5
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 6.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 8.6
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.6
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 199 bits (485), Expect = 4e-52
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 2/216 (0%)
Frame = +2
Query: 101 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKE--KKLASEVI 274
R+LVGVKR +DY +K R+ K+ V G K S+NPF +IAVEEA+RMKE K + +
Sbjct: 5 RILVGVKRTLDYMLKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETLKNRIEDTL 64
Query: 275 AVSCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIV 454
V+ G + ++ LR LA G RA + V E L+P+ VAK+L + EK++LV++
Sbjct: 65 VVTAGQTSSEPILRQCLAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLL 121
Query: 455 GKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLS 634
GKQAIDDD++QT M AA+L WPQ T ASK+ + +TREIDGG E + + +PA+++
Sbjct: 122 GKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGDKVIVTREIDGGEETLSSTLPAIIT 181
Query: 635 ADLRLNEPRYATLPNIMKAKXKPLKKVSAKDLGVDL 742
DLRLN PR+A L +MKA+ PL K+S +DLGV +
Sbjct: 182 TDLRLNVPRFANLAKVMKARKAPLGKMSPEDLGVTI 217
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.7 bits (66), Expect = 0.23
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = -2
Query: 654 SFSRKSALSTAGIFVL-ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICAVWLE 478
SF++ S+LS++ + TS S+S + A S S +P S+ ++
Sbjct: 504 SFTKFSSLSSSQLSTENFTSASSSLS--LTNAKSSLSTPSTTIPTSNSS-----VSLQTS 556
Query: 477 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAVLRVSCA 298
SS + P I+ S ++ S + + N SY TS+ I S+ + L C+
Sbjct: 557 SSLIISSPIISSSLTATSTSTPALTHSITPSNTSY----TSSLIPSSSTDYSSSLITVCS 612
Query: 297 CDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFT 151
+ E + TSLA+ S + + ++ S F+ T TT GFT
Sbjct: 613 -NVTSEISSTSLASLISTLTSQQISSNKSSEFVGQTTTEYTTSGSVGFT 660
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 235 CSNERKKVSKRSHCSLLWTITSTGNSQNCSCD 330
CSN ++S S SL+ T+TS S N S +
Sbjct: 611 CSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.23
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = -2
Query: 489 VWLESSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYS-APATST*IARSAPIARAVL 313
V + SSS++ +T S FSS S + + S + + A T + S + +V+
Sbjct: 157 VSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVV 216
Query: 312 RVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFTRIFTA* 133
S + + +TS + S I + SS++ S+ + + S T S + I ++
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
Query: 132 SITLLTPTRT 103
S + +PT T
Sbjct: 277 SSSSSSPTST 286
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 557 QSFL-SLMQMCLVANLIKQQSSVLSGWSHHL 468
Q FL SL C++ IK S++ W+HHL
Sbjct: 73 QIFLFSLFGSCMLFRFIKYPSTIKDSWNHHL 103
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 477 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAV 316
SSS + PTIT+S+ S+ S + N SYS+P +S + S I ++
Sbjct: 781 SSSSSATPTITQSSISTSVSSQS------SMNSSYSSPISSNSVTSSTSIISSI 828
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 591 PSISRVIVRAPSVFSIFDANVPCGQS 514
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 606 ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 496
ITS P+ S++ VR + S FD ++P G S A I
Sbjct: 143 ITSSTPTPSQLPVRPSTSLSFFD-DIPLGPSFSAETI 178
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.5
Identities = 27/130 (20%), Positives = 53/130 (40%)
Frame = -2
Query: 564 APSVFSIFDANVPCGQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFANIFAT*MGC 385
+PS S P S+ ++ + SSS + + + S+ SS S ++ ++
Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202
Query: 384 NVSYSAPATST*IARSAPIARAVLRVSCACDGPQETAMTSLANFFSFIRTASSTAISSKG 205
+ S S P TS+ + + + + S + ++ + + +FI T + T SS
Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262
Query: 204 FIECFTPSVT 175
PS T
Sbjct: 263 STSSEVPSST 272
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 6.5
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +2
Query: 293 SQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAID 472
SQ + LR H++ + E DT + + + + K QDE L + K+AID
Sbjct: 6 SQPEFVLRAPTEFSEKFVRHLQES-TETDTSRYMDMENYIQKRVQDELKQLQLRQKKAID 64
Query: 473 DDSNQTAQMTAALLDWPQGTFASKI 547
+ + A + QG+ S +
Sbjct: 65 AIQEEEWKSNAKTIKDSQGSLDSNL 89
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.5
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 372 SAPATS-T*IARSAPIARAVLRVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIE 196
S P TS T + S PI + + V+ + T + + S SSTAI+S +
Sbjct: 3273 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALN 3331
Query: 195 CFTPSVTTPDLSGFTRIFTA*SITLLTPTRTRDI 94
TP ++ L+ T I ++ + TP + +
Sbjct: 3332 TSTPITSSSVLNSSTAITSSSILNSSTPVTSSSV 3365
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 537 ANVPCGQSNKAAVICAVWLES--SSMACL 457
A+ PCG+ KAA C V+ +S M CL
Sbjct: 206 AHGPCGEEFKAAFSCFVYSKSEPKGMECL 234
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.6
Identities = 26/106 (24%), Positives = 43/106 (40%)
Frame = -2
Query: 477 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAVLRVSCA 298
SSS + + S+ SS S A+ ++ S S+ TST A S+ V A
Sbjct: 189 SSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTA 248
Query: 297 CDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLS 160
+A ++ ++ S + +ASS +S S + D S
Sbjct: 249 STDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSASSDAS 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,727
Number of Sequences: 5004
Number of extensions: 61108
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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