Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P20
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560... 266 1e-71
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 30 2.2
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 29 2.9
06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423 29 5.1
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 5.1
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 6.8
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 9.0
02_01_0429 - 3132848-3135043 28 9.0
>04_01_0424 -
5601690-5601915,5602099-5602187,5603298-5603378,
5604875-5605240
Length = 253
Score = 266 bits (653), Expect = 1e-71
Identities = 131/214 (61%), Positives = 163/214 (76%)
Frame = +2
Query: 101 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKEKKLASEVIAV 280
++LV VKRV+DYAVK+RV+PD++GV T VK SMNPF EIAVEEA+R++E A+EV+A
Sbjct: 2 KILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGAATEVVAA 61
Query: 281 SCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGK 460
+ GPSQ+ +TLRTALAMGADRA+HV L P+ VAKIL L+ E LVI+GK
Sbjct: 62 TVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGK 121
Query: 461 QAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSAD 640
QAIDDD NQT QM A LL+WPQGTFASK+ T+ RE+DGG+E I +PAV++ D
Sbjct: 122 QAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEKATVEREVDGGIETISLDLPAVITTD 181
Query: 641 LRLNEPRYATLPNIMKAKXKPLKKVSAKDLGVDL 742
LRLN+PRYATLPNIMKAK K +KKV+ +DL VD+
Sbjct: 182 LRLNQPRYATLPNIMKAKSKVIKKVTPEDLDVDI 215
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 473 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLS--ADLR 646
DD+N ++LD Q F+ KI K+ G L +E+ G + ++P+ L +L+
Sbjct: 1373 DDANIIKLSKLSILDLEQNMFSGKIPKSIGQLKRLKELRLGENKLYGELPSTLGNCTNLK 1432
Query: 647 LNEPRYATLP-NIMKAKXKPLKKVSAKDLGVD 739
+ + ++ L ++ K L ++ DL V+
Sbjct: 1433 ILDLKFNNLSGDLGKIDFSSLSNLTTIDLLVN 1464
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 473 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 631
DD+N ++LD Q F+ I K+ G L +E+ G + ++P+ L
Sbjct: 693 DDANIIKLSKLSILDLQQNIFSGNIPKSIGQLKRLKELHLGENYLYGELPSTL 745
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 413 AKLSQDEKADLVIVGKQAIDDDSNQTAQMTAAL--LDWPQGTFASKIEKTDG 562
A+L + + +G D+D + A T+ L +DWP G + IEK DG
Sbjct: 29 ARLRSGNGEEAMQLGGDRYDNDVDGVAAFTSKLRRVDWPAGFKPTGIEKYDG 80
>06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423
Length = 209
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +2
Query: 218 IAVEEAVRMKEKKLASEVIAVSCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIH 397
+A E VRM K++ E+ + Q + A+GAD+ + A+ + +
Sbjct: 41 MAKERRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADQYLSSLTTIADVELSNDLQ 100
Query: 398 VAKILAKLSQDEKADLVIV 454
V K+ + DE+ V +
Sbjct: 101 VCKVYVSVFGDERGKKVAI 119
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 594 PPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 496
PP++ ++ ++ D ++P G NKAAV+
Sbjct: 702 PPTVREPVINRSGMYPKVDLDIPIGIHNKAAVV 734
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 630 STAGIFVLITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICA 490
S A +F + +PPS R +R P + F A CG+ N A+ CA
Sbjct: 112 SPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLN--AIACA 156
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 125 VIDYAVK-IRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKEKKLASEVIAVSCGPSQA 301
V+D+A R D S V D H I +E R + L + AV C +
Sbjct: 1990 VLDHAGSPARRTDDASSEVVDFRTHFSGQRSLITRDELERSPDI-LRDDRFAVRCDLTVM 2048
Query: 302 QETLRTALAMGADRAIHV 355
E L TALA GAD + V
Sbjct: 2049 DEHLLTALAAGADAGVVV 2066
>02_01_0429 - 3132848-3135043
Length = 731
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 473 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 631
DD+N ++LD Q F+ I K+ G L +E+ G + ++P+ L
Sbjct: 270 DDANIIKLSKLSILDLQQNIFSGNIPKSIGQLKRLKELHLGENYLYGELPSTL 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,836
Number of Sequences: 37544
Number of extensions: 381128
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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