Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P20
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 92  KMSRVLVGVKRVIDYAVKIRVKPDKS-GVVTDGV-KHSMNPFDEIAVEEAVRMKEKKLAS 265
           ++S    G+K   DYA+++R K  +  G  T  V K + +      V E   M+ + +A 
Sbjct: 477 ELSATFKGLKPSTDYAIQVRAKTTRGWGEYTPVVYKKTPHAMGLDYVGEDDNMQVRIIAG 536

Query: 266 EVIAV 280
            ++AV
Sbjct: 537 AIVAV 541


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -2

Query: 522 GQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFANI 406
           G  +   ++C +W+    ++C  +I      S D F  I
Sbjct: 105 GNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAI 143


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 323 LAMGADRAIHVEVAGAEYDTLQPIHVAKILA 415
           + +G+D   ++E+   E D +  IHV   +A
Sbjct: 463 VTVGSDGNANIEIGAGEEDGVLAIHVKAKMA 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,035
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)