Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P16
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    29   0.88 
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.88 
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    27   2.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.5  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   3.5  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.5  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    26   4.7  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    26   6.2  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   6.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   6.2  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    26   6.2  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   8.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.2  

>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 375 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKPG 509
           P++P P+EK +  + ++          KA +S +  +D ATYKPG
Sbjct: 156 PQVPVPSEKNQKVLRQIAD--------KAFESNMHIIDMATYKPG 192


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 573 AKNEAYTPSGGAKKIVTNKLEWNAKSKVGSLXN 671
           AK E+  PS G KK  T KLE  AKS      N
Sbjct: 70  AKKESEKPSDGEKKGKTEKLEKEAKSVYSKACN 102


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 341 SIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI 469
           SII + C   +  + +P  K+    +  +  EC  +K KS+EI
Sbjct: 61  SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEI 103


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 NSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 463
           + RN Y D+K  S+ E +SS+E  +A++ S+
Sbjct: 39  SERNGYGDKKGSSSKEKTSSFEDELAEYASQ 69


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 150 EVNDGVAVEKH-VEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKK 281
           E N   A  K  +   +TE  N +  + ST+    N + S+PNKK
Sbjct: 571 EANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATASAPNKK 615


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 174 EKHVEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKTP 299
           +KH E    +GD+DS  +   +G DL     +P K   +K+P
Sbjct: 275 KKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKN-KSKSP 315


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 441 PSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITP 563
           P   L A K K+G L +  Y+  G   KIE +  E   I P
Sbjct: 489 PEDVLSAYKDKVGDLASRGYRSLGVARKIEGQHWEIMGIMP 529


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 251 EIISLC-RFVNSAVVISLCVMFFHVLLDSNSVVDFGHF 141
           EI+ L  +  N ++++  CV  FH+  ++   +D  HF
Sbjct: 207 EILELIEKSKNPSILVDACVSRFHIQQETQDFIDATHF 244


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 601 EELKRLSLINWSGTQNRKSVPSXTLLTSPAAVIR 702
           E L  ++++N+S T   K+V   TL  + +AV+R
Sbjct: 264 ETLPVINIMNYSSTTGEKTVQVSTLAKAKSAVVR 297


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 319 TVLGRAFLDHRARVQQPKLQ 378
           TVL RA+L H++R+  P +Q
Sbjct: 41  TVLERAYLTHQSRIVHPDIQ 60


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 151 KSTTELLSRSTWKNITQREITTAELTNLHKEMISMDL 261
           K +T     S W+++  R  T   +  + KE+ SMD+
Sbjct: 107 KGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVRSMDM 143


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = +3

Query: 135 HLKMAEVNDGVAVEKHVEKHNTEGDNDS--GVDESTQGNDLNGSPSSPNKK--IVNKTPT 302
           HL+M + N    +EK  E++N E + ++   ++ S++ +D         ++   V K   
Sbjct: 29  HLRMTQQN--AEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKILR 86

Query: 303 KEXXXXXXXXXXXXXXXXXXTAKTPEIPTPTEKKKVPMNK 422
            E                  T + P+ PTP+   +VP  K
Sbjct: 87  DEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPKKK 126


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 375 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSL 485
           P     T ++KV M  VQVG+  S + +A KSK GS+
Sbjct: 774 PRCTQLTTQEKVDM-WVQVGDVKSASEEAAKSKSGSV 809


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 123 AYQVHLKMAEVNDGVA--VEKHVEKHNTEGDNDSGVDESTQGNDLNGS--PSSPNKKI 284
           A  V  +M E  D     +E   E    +G+ D+G+DE  Q ND   S  P  P  KI
Sbjct: 25  ADNVDTEMGEFEDAYEDEIESEEEYIEADGEKDNGMDEEEQ-NDAQPSKIPWLPGGKI 81


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 381 FLEFWLLHSCSMIEKGSP*DCYSIFLLLAFC 289
           F E+  +H+C  ++K S  +  S+FLL  FC
Sbjct: 186 FFEWKTIHACPTVKKDSTLNPVSVFLL--FC 214


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 269 SEQENRKQNANKRKIE*QS*GEPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSS 430
           S++  +KQ  +K+K E  S  E  S   +  +S +   S     E S+ E SSS
Sbjct: 67  SKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,751
Number of Sequences: 5004
Number of extensions: 59791
Number of successful extensions: 207
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)