Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P15
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...   192   6e-50
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    49   8e-07
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      35   0.014
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    28   1.3  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    28   1.7  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   3.8  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   5.1  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   6.7  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   8.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score =  192 bits (467), Expect = 6e-50
 Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
 Frame = +2

Query: 239 WEKQQKKTFTAWCNSHLRKAGT-GIENIEDDFRNGLKLMLLLEVISGETLPKPDRG-KMR 412
           W+  Q +TFT W N+ L       + ++  D  +G+ L+ LLE+I  E L + +R  +MR
Sbjct: 6   WQSVQNRTFTKWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMR 65

Query: 413 FHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTA 592
            H++ NVNKAL++I SKG+ L +IG  +IVDGNLK+ LG+IWT+ILRF I DI+ E +TA
Sbjct: 66  VHRLENVNKALEYIKSKGMPLTNIGPADIVDGNLKLILGLIWTLILRFTIADINEEGLTA 125

Query: 593 KEGLLLWCQRKTAPY-KNVNVXNFHLSFKDGLAFCALIHRHRPXLIDYSKLSKDN 754
           KEGLLLWCQRKTA Y   V+V +F  S+ +GLAFCALIH+HRP L+DY+KL K N
Sbjct: 126 KEGLLLWCQRKTANYHPEVDVQDFTRSWTNGLAFCALIHQHRPDLLDYNKLDKKN 180


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
 Frame = +2

Query: 245 KQQKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL--------PKPDR 400
           +++ + FT W NS        I +  ++ R+GL L+   + I+  T+        P    
Sbjct: 385 EREARVFTLWLNS--LDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGD 442

Query: 401 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII---LRFAIQDI 571
             MRF  + N N A+D   ++G  LV I   +I DG+  +TL ++W ++   +   +  +
Sbjct: 443 EMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSL 502

Query: 572 SVEEMTAKEG-LLLWCQRKTAP-YKNVNVXNFH-LSFKDGLAFCALIHRHRPXLIDYS 736
           S    T  +  ++ W     A   K   + +F   S   G+    ++H  +   +DY+
Sbjct: 503 SRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYN 560



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
 Frame = +2

Query: 323 DDFRNGLKLMLLLEVISGETLPKPDRGKMRFHK-------IANVNKALDFI-ASKGVKLV 478
           D  ++GL L  L+     +T+ +    K R +K       I N N  ++   A  G+ + 
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISIT 206

Query: 479 SIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV 577
           +IGA +I++G   + LG++W II R  +  I +
Sbjct: 207 NIGAGDILEGREHLILGLVWQIIRRGLLGKIDI 239


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 320 EDDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFIASKGV-KLVSIGAE 493
           E   RNG+ L LL++    + L K     +++F    N+NK LDFI   G+ ++      
Sbjct: 66  EQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELT 125

Query: 494 EIVDG-NLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 604
           +I +G NL   +  I  +    ++QD++   + + E L
Sbjct: 126 DIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 163


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 265 HSMVQQSPQKSW-----HRHREHRGRLPQWPEAHVAAGGHLRRDSAQARPW 402
           H  +++ P+ +W     H+HRE RG      ++     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATW 189


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 265 HSMVQQSPQKSW-----HRHREHRGRLPQWPEAHVAAGGHLRRDSAQARPW 402
           H  +++ P+ +W     H+HRE RG      ++     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNSPQHATW 189


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 599 GLLLWCQRKTAPYKNVNVXNFHLSFKDGLAFCALIHRHRPXLIDYSKLSKDN 754
           GL L+ Q + A    +    F +   D   FCAL H +     D S L +DN
Sbjct: 13  GLTLFSQFQRAFGLTITRRGFKVQESDEEPFCALHHPNTGEYFDLSGLIRDN 64


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 242  PRPGLGDPHAPTPPLVPCNRPGTTRHSCLSP-RCPSSWSPH*PSIRCSFEPMTANSRVLI 66
            P+P +G P  P P   P   P  T  + L P   P++ +P  P+   S  P  +  R  +
Sbjct: 1201 PKPSVGVPPVPPPSTAP---PVPTPSAGLPPVPVPTAKAPPVPA-PSSEAPSVSTPRSSV 1256

Query: 65   RTAHCNRQPA 36
             + H N  P+
Sbjct: 1257 PSPHSNASPS 1266


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 245  SPRPGLGDP---HAPTPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSR 75
            SP+P + D    HAP PP+ P N      H+ ++ R PS+     P  R SF  +++ S 
Sbjct: 1364 SPKPQIPDSSNVHAPPPPVQPMN--AMPSHNAVNAR-PSA-----PERRDSFGSVSSGSN 1415

Query: 74   V 72
            V
Sbjct: 1416 V 1416


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 343 EAHVAAGGHLRRDSAQARPW 402
           EAHVAA  +LR+     RPW
Sbjct: 250 EAHVAALDYLRQHFVSCRPW 269


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +2

Query: 419 KIANVNKALDFIASKGVKLVSIGAEEIVDGNLKM----TLGMIWTIILRFAI---QDISV 577
           K  N N+AL  I S G+     G  EI    L+     +L +I   I  F     +D+S+
Sbjct: 242 KHCNTNRALKIIHSLGMFACIFGPLEIHTKKLQSKNIESLSLIPYAIDLFGYLQKKDVSI 301

Query: 578 EEMTAKEGLLLWCQRKTAPYKNVNV 652
           + +++    + W    T P+ N ++
Sbjct: 302 KNLSSSSKYIFWLAIATLPWYNWSI 326


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 235 GLGETTEKDIHSMVQQSPQKSWHRHREHRGR 327
           G+  T  + +HSM +Q     W ++ +  GR
Sbjct: 377 GITYTGSRTLHSMAEQGHAPKWFKYVDREGR 407


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 100 NEHRIDGQCGDHDDGQRGDKQL 165
           +E  I+    DHDDG+  D +L
Sbjct: 204 SESEIESSDSDHDDGENSDSKL 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,608
Number of Sequences: 5004
Number of extensions: 58709
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)