Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P14
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 36 0.006
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 36 0.009
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 32 0.080
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 29 0.74
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 29 0.74
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.98
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 28 1.3
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 2.3
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 2.3
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 27 2.3
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 6.9
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 6.9
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 9.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.2
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.2
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = +2
Query: 308 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 487
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 488 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 589
L+I+ + +++ S +K K ++ F KS N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.009
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = +2
Query: 320 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 493
+QVKL Y WDQ+ V + + + QV +++ +++ ++ E K +L+
Sbjct: 2 HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57
Query: 494 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWS 601
L + IN+ +S W ++ +++VI L KSN WS
Sbjct: 58 SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWS 94
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 32.3 bits (70), Expect = 0.080
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Frame = +2
Query: 407 PKEQVYCKLTDKSMELHVDNLENKDYLLVIN----KLLEPINVADSHWKQKTDKVVIFLA 574
PK+ +C+L + + H++ L++K + L+ + + L +N +++
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYI 390
Query: 575 KSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSIMSLMKNMYETGDDEMXRMIS 754
+T++ K+ ++ N L+ ET+ K +K ++E R+I
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 755 RLG 763
+G
Sbjct: 451 EIG 453
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 521 VADSHWKQKTD--KVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQDSI 694
+AD+ W D K V +L + + + + ++++ N+ K A D KDP D
Sbjct: 55 IADTVWYYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDES 114
Query: 695 MSLMKNMYETGDDE 736
+ +KN+ +DE
Sbjct: 115 SNGIKNLSLNKNDE 128
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 536 WKQKTDKVVIFLAKS--NPNTTWSHMTEIE---KKFEDQRNNRLKPAETDKKDPQDSIMS 700
WK+ D V + K N NT + + ++ F + N P+E D++ +
Sbjct: 251 WKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDE 310
Query: 701 LMKNMYETGDDEMXRMISR 757
L++ Y+ G+D ++I R
Sbjct: 311 LLELDYQIGEDFKEKLIPR 329
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 587 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 685
NT W M +E++ + R + LKP D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 774 LSFIPSLEIILFISSSPVSYIFFMRLIMESCGSFLSVSAGFKRLLRWSSN 625
LS + S EI ++ S ++F ++I+++CG+ ++ A RLL +S+
Sbjct: 69 LSVVNSEEIDAYLLSESSMFVFAHKIILKTCGT-TTLLASLPRLLEIASS 117
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 476 KDYLLVINKLLEPINVADSHWKQ 544
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 509 EPINVADSHWKQKTDKVVIFLAKSNPNTTW-SHM-TEIEKKFEDQRNNRLKPAETDKKD 679
EPI+ + ++ L+K P W SHM ++ +K+ E+ +L+ A+ D D
Sbjct: 202 EPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDWND 260
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.3
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Frame = +2
Query: 311 QKKYQVKLNVYGWDQSDKFVKVFVE---LKNVHTLPKEQVYCKLTDKSMELHVDNLENKD 481
Q + + +++Y D+ V + +E LK L ++ + D E V E
Sbjct: 190 QTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVP--EKSS 247
Query: 482 YLLVINKLLEPI--NVADSHW----KQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRN 643
+ L +K+ + V++ W K + V AK + +++ S T+ + K D
Sbjct: 248 FKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGNTKNKAKDWDSLA 307
Query: 644 NRLKPAETDKKDPQDSIMSLMKNMYETGDDEMXRMISR 757
+L E D+ + ++ +L +N+Y+ DD+ R + +
Sbjct: 308 -KLADLEEDEPTGEAALANLFQNLYKNADDDTRRAMMK 344
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 190 GFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYISSSAKEVSSQIEC 339
GF +GD+ D NNI +N + H+K S K + +I+C
Sbjct: 112 GFLTVGDEFYKDGVNNISSLLTSSSNQRFNDNHHK---SIVKRIRHEIKC 158
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 6.9
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 308 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 487
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 488 LVINKLLEPINVADSHWKQK 547
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 554 YLFFVSNDCLPHL 516
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 320 TSFALELMYLLWVLVIL-PLASKFPFLLMLLV 228
TS+ ++ MY W+L+ L L S F LLV
Sbjct: 91 TSYMVDYMYFSWILIFLAALTSVKVFAFYLLV 122
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 461 DNLENKDYLLVINKLL 508
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 323 DTSFALELMYLLWVLVILPLASKFPFLLMLLVLS 222
D S A+ +W++ LP+A LL+LL+ S
Sbjct: 1560 DKSRAVNGFIRIWIMAALPIAISTAALLILLMFS 1593
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = +2
Query: 47 LFVISKDLHSIQTNCSFIKMSEAKIQEIRSDIEEFNDLLKQAKRKKVQDLLSLE 208
L +I++ + +N ++I + + ++++ + FN+ KQA K + ++ E
Sbjct: 54 LLIINEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATETKEEAAITEE 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,037
Number of Sequences: 5004
Number of extensions: 63704
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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