Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P14
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 77 2e-14
08_02_0318 + 15710834-15711775 30 1.8
07_03_0674 + 20598668-20598774,20599456-20600467 30 1.8
08_02_0822 + 21549257-21550729,21550776-21550877 29 4.1
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 7.2
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 28 7.2
06_03_0515 + 21648685-21648707,21648790-21649291 28 9.5
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 28 9.5
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 76.6 bits (180), Expect = 2e-14
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 5/216 (2%)
Frame = +2
Query: 125 EIRSDIEEFNDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTS 301
E+R D+EE L AKR +V L+ EIR + SP + +
Sbjct: 5 ELRLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAA 64
Query: 302 APVQKKYQ----VKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 469
AP V L + WDQ + +K++V L+ V +++V S++ ++
Sbjct: 65 APAPAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDV 121
Query: 470 ENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNR 649
+ K+Y I KL + I K K+++ L K++ W + E KF
Sbjct: 122 KGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKASKGN-WLDLHFKEDKF------- 173
Query: 650 LKPAETDKKDPQDSIMSLMKNMYETGDDEMXRMISR 757
KP+ +KDP IM LMKNMYE GD++M R I++
Sbjct: 174 -KPSMAKEKDPMSGIMDLMKNMYEEGDEDMKRTIAK 208
>08_02_0318 + 15710834-15711775
Length = 313
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -1
Query: 296 YLLWVLVILPLASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 174
Y L LV++PL P ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVPL----PVQVVALALSSVWETPRRTSPVAAFL 264
>07_03_0674 + 20598668-20598774,20599456-20600467
Length = 372
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 263 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 439
P +VSP P P++K + K ++Y FVK + ++ N H E ++ +L+
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276
Query: 440 KSMELHV 460
+ EL+V
Sbjct: 277 WAPELYV 283
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/41 (24%), Positives = 28/41 (68%)
Frame = +2
Query: 434 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 556
++K +E++ D +NK+ ++++ ++ E +N+ +SH + T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 611 EIEKKFEDQRNNRLKPAETDKKDPQDS 691
E+E++ E R R+K E D+K P DS
Sbjct: 361 ELERERERLRERRMKERERDRKHPADS 387
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 533 HWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLK 655
H + +K + F A S TW +T+I KFE R R++
Sbjct: 196 HTNVEPNKDIGFTA-SKQGETWERVTQIRDKFEYDRERRMR 235
>06_03_0515 + 21648685-21648707,21648790-21649291
Length = 174
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 455 HVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFED 634
HV + + +N E + + D H K+K V +F+ S+P+ + + E E + E+
Sbjct: 67 HVQHYDVLKTFPEVNSDQELLVMFDLHNKKKV--VEMFIVYSDPSEPFKPINEWEFEEEE 124
Query: 635 QRNNRLKP 658
Q +N ++P
Sbjct: 125 QPDNNIEP 132
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 521 VADSHWKQKTDKVVIFLAKSNPNTTWS---HMTEIEKKFEDQRNNRLKPAETDKKDPQDS 691
VAD ++ T+K I + + + T++ +M E+ FE RN+ L + +K+P+
Sbjct: 70 VADIEERRATEKQPIIVIDNYDSFTYNLCQYMGELGLNFEVYRNDELTIEDVKRKNPRGI 129
Query: 692 IMS 700
++S
Sbjct: 130 LIS 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,323,032
Number of Sequences: 37544
Number of extensions: 343559
Number of successful extensions: 865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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