Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P12
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 99 5e-21
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 95 4e-20
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 62 5e-10
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 57 1e-08
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 53 2e-07
11_06_0117 + 20302795-20304816 31 1.1
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 31 1.4
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 30 2.5
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663... 30 2.5
04_01_0390 - 5133416-5133472,5134153-5134234,5134368-5134426 30 2.5
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 4.4
12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993... 29 5.8
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711... 29 5.8
07_03_0213 - 15244299-15246311 29 5.8
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 5.8
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 29 5.8
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 98.7 bits (235), Expect = 5e-21
Identities = 42/106 (39%), Positives = 65/106 (61%)
Frame = +1
Query: 496 EASKWLAKLLQYNVPNGKKNRGLATILAYKMLEKKENLTPENILLANVMGWCVEMFHTHQ 675
E +W+AK++ YNVP GK NRGL+ + +Y +L + + E+ LA V+GWCVE
Sbjct: 95 ETRQWVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVEWLQASA 154
Query: 676 LLLNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTXLKR 813
L+L+DI + RR CW++ P VG++ IND L++ + +KR
Sbjct: 155 LVLDDITDNAYTRRDNLCWYKLPTVGMSAINDGVLLKCHVQAIIKR 200
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 95.5 bits (227), Expect = 4e-20
Identities = 46/122 (37%), Positives = 71/122 (58%)
Frame = +1
Query: 448 DIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLEKKENLTPENIL 627
D + LT + I ++ K+L YNV GK NRG++ I ++KML+ + L E
Sbjct: 47 DRIISLTYECRWIKELRVAQSATKMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETF 106
Query: 628 LANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTXL 807
LA +GWC+E + L+L+DIM+ + RRG PCW R P VGL +ND ++++ + L
Sbjct: 107 LACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGIILRNHISRIL 166
Query: 808 KR 813
+R
Sbjct: 167 QR 168
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 62.1 bits (144), Expect = 5e-10
Identities = 38/106 (35%), Positives = 55/106 (51%)
Frame = +1
Query: 496 EASKWLAKLLQYNVPNGKKNRGLATILAYKMLEKKENLTPENILLANVMGWCVEMFHTHQ 675
+A +WL +L YNV G+KN ML + P N L GW ++ +
Sbjct: 42 DAIQWLESMLDYNVLGGEKN----------MLFRNNATKPNNGTLR--YGWQLQAYF--- 86
Query: 676 LLLNDIMEGTTMRRGVPCWHRRPDVGLNGINDAALIQSAMYTXLKR 813
L+L+DIM+ + RRG PCW R P VGL IND +++S + +R
Sbjct: 87 LVLDDIMDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRR 132
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +1
Query: 415 DQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLE 594
D F+ + + DL EA +WLA+++ YNVP GK NRGL+ I +Y +L+
Sbjct: 53 DARERFVQAYGRLRDDLVGDDSCELTDEARRWLAQMIDYNVPGGKLNRGLSVIDSYLLLK 112
Query: 595 KKENLTPENILLANVMGWCVEMFHTHQLLL 684
+ +T ++ LA V+G C + H H L+
Sbjct: 113 QGSEVTEDDFFLACVLG-CFK--HVHYYLM 139
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = +1
Query: 388 ATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLA 567
A G V K++ EF ++ + +L + +W+ ++L YNVP GK NRGL+
Sbjct: 8 ACGGGGVDKEKE-EFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLS 66
Query: 568 TILAYKMLEKKENLTPENILLANVMG 645
+ +YK+L+ L+ E++ LA+ +G
Sbjct: 67 VVDSYKLLKGTNVLSQEDMFLASTLG 92
>11_06_0117 + 20302795-20304816
Length = 673
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 566 ASPLFFLPFGTLYCNSLANHLLASGTSMCLP 474
+S LFFL G L N++ANH A C+P
Sbjct: 5 SSLLFFLMIGALLTNAMANHAPAPAAVNCVP 35
>05_07_0367 - 29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Frame = +2
Query: 260 WPRGWTSRRASHHRLRKPDRRDC*SCKNITDSCRP*LLRK-CRWLPEDWPFPRTSPGSSW 436
WP WT R ++ HR+ +R ++ SC P +R+ WP P S
Sbjct: 742 WPMLWTLRYSTFHRI---NRSFVAYATSLKTSCGPSDIRRFAETTAASWPMP-----SDI 793
Query: 437 LSFRTSSGISLRLASTLMF----RKPANGWLSCCNIMYQTVRR--IGDWP 568
F ++ S + TL + R A W + Y T RR WP
Sbjct: 794 RRFAETTAASWAMLWTLRYSTFRRTTAASWPMLWTLRYSTFRRTTAASWP 843
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Frame = +2
Query: 230 RQLASPILMPWPRGWTSRRASHHRLRKPDRRDC*SCKNITDSCRP*LLRK-CRWLPEDWP 406
R+ A WP WT R ++ HR+ +R ++ SC P +R+ WP
Sbjct: 550 RRFAETTAASWPMLWTLRYSTFHRI---NRSFVAYATSLKTSCGPSDIRRFAETTAASWP 606
Query: 407 FPRTSPGSSWLSFRTSSGISLRLASTLMF----RKPANGWLSCCNIMYQTVRRI 556
P S F ++ S + TL + R A W + Y T RI
Sbjct: 607 MP-----SDIRRFAETTAASWPMLWTLRYSTFRRTTAASWPMLWTLRYSTFHRI 655
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 607 LTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHR 738
LT E+ LA + +EM HT L+ +D+++ + MRRG H+
Sbjct: 205 LTTEHQRLAEI----IEMIHTASLIHDDVIDDSGMRRGKETIHQ 244
>05_07_0261 +
28764571-28764733,28766039-28766153,28766241-28766344,
28766571-28766698,28766765-28767328
Length = 357
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 607 LTPENILLANVMGWCVEMFHTHQLLLNDIMEGTTMRRGVPCWHR 738
LT E+ LA + +EM HT L+ +D+++ + MRRG H+
Sbjct: 95 LTTEHQRLAEI----IEMIHTASLIHDDVIDDSGMRRGKETIHQ 134
>04_01_0390 - 5133416-5133472,5134153-5134234,5134368-5134426
Length = 65
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 327 QSLRSGFLSLW*LA--RRLV-QPRGHGIRIGDASC 232
Q F + W L R LV QPRG GIRI D+SC
Sbjct: 4 QKFNVNFSTSWYLTVPRSLVGQPRGQGIRIYDSSC 38
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 731 QHGTPRRIVVPSMMSFSRSW--WVWNISTHHPITFASRM-FSGVKFSF 597
+ GTP ++ V + F SW WV + FAS F+ +KF+F
Sbjct: 1407 EDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNF 1454
>12_02_0554 +
20351660-20352299,20398588-20398907,20399120-20399344,
20399375-20399818
Length = 542
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 454 VRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLEKKENLTP 615
++D+ + + E WL L +N K + + ++ +K+ EKK+ + P
Sbjct: 306 LKDILNNKRPLPTTEGRSWLQMNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCP 359
>12_01_0778 +
7111562-7112152,7113034-7113157,7113252-7113395,
7113485-7113630,7113716-7113838,7113922-7114089,
7114253-7114474,7114572-7114745
Length = 563
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 501 GFRNINVLASLSEIPDDVRKDSHELPGLVLGNGQSSGS 388
G N+ L+++S + D R P VLGN SSG+
Sbjct: 34 GAANMRCLSTVSSVSDAARAVMSNEPATVLGNSGSSGN 71
>07_03_0213 - 15244299-15246311
Length = 670
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 442 FPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNG 546
FP ++ L +H+ +W KL QYN+ G
Sbjct: 353 FPGVIAALLSLVRHLHPDSRGEWSGKLAQYNMIEG 387
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 214 RRHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKYHRFLSTLTPQEMPMAT 393
+ H+ K T++D+M PR ++A P P + + Y RF T T E P+
Sbjct: 77 QEHVIKVREATSNDSMPPRFTRAA---PAMTRAAPFKTRSYEAYPRFRRT-TLGEWPVRE 132
Query: 394 RGLAVSKDQSREFMAVFP 447
SK R ++ P
Sbjct: 133 IRTGPSKAAPRRRVSPEP 150
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 304 EETGPKR--LLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSRE 429
++ GPKR LLK QK + T+ P+E+ + LA +++RE
Sbjct: 500 DKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVLAAKYEEARE 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,496,867
Number of Sequences: 37544
Number of extensions: 551379
Number of successful extensions: 1779
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -