Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P12
         (814 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   2.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.8  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   3.7  
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         25   3.7  
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         25   3.7  
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         25   3.7  

>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 235 TSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKYHRFLSTLTP 372
           TS   +D   P+  +        ++ GP  L +LQ+  +  S LTP
Sbjct: 31  TSFDGNDGFGPQTRKGRRPVADDQQPGPSGLQRLQQQQQQPSRLTP 76


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 714  SRRSVLAPTA*RRSKRHQRRCPDPIRNVYXS 806
            +R S  +PT  ++SKRHQ     PIR++  S
Sbjct: 1459 ARSSPASPTPSKKSKRHQ--SASPIRHILNS 1487


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 373 QEMPMATRGLAVSKDQSREFMAVFPDIVRDLT 468
           QE P A+   AV   +S    AV  D+V +LT
Sbjct: 230 QEQPRASTSRAVMPPRSEALTAVRGDVVPELT 261


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 660 VPHPPTSTE-RHHGRYHDASRR 722
           V  P  ST+ RHH R+H   RR
Sbjct: 18  VSEPSASTKHRHHSRHHHRRRR 39


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 660 VPHPPTSTE-RHHGRYHDASRR 722
           V  P  ST+ RHH R+H   RR
Sbjct: 18  VSEPSASTKHRHHSRHHHRRRR 39


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 660 VPHPPTSTE-RHHGRYHDASRR 722
           V  P  ST+ RHH R+H   RR
Sbjct: 18  VSEPSASTKHRHHSRHHHRRRR 39


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,483
Number of Sequences: 2352
Number of extensions: 20748
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)