Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P08
         (503 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9GYU7 Cluster: Mediator of RNA polymerase II transcrip...    81   1e-14
UniRef50_Q9BTT4 Cluster: Mediator of RNA polymerase II transcrip...    53   3e-06
UniRef50_A7RMD0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ...    52   7e-06

>UniRef50_Q9GYU7 Cluster: Mediator of RNA polymerase II
           transcription subunit 10; n=9; Coelomata|Rep: Mediator
           of RNA polymerase II transcription subunit 10 -
           Drosophila melanogaster (Fruit fly)
          Length = 133

 Score = 81.0 bits (191), Expect = 1e-14
 Identities = 38/41 (92%), Positives = 41/41 (100%)
 Frame = +1

Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
           MS+PLENLETQLEMFIENVRQIRIIVSDFQPQGQ+VLNQK+
Sbjct: 1   MSAPLENLETQLEMFIENVRQIRIIVSDFQPQGQNVLNQKI 41


>UniRef50_Q9BTT4 Cluster: Mediator of RNA polymerase II
           transcription subunit 10; n=19; Euteleostomi|Rep:
           Mediator of RNA polymerase II transcription subunit 10 -
           Homo sapiens (Human)
          Length = 135

 Score = 53.2 bits (122), Expect = 3e-06
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +1

Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
           M+   ++LE  LE F+EN+RQ+ IIVSDFQP  Q+ LNQK+
Sbjct: 1   MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKL 41


>UniRef50_A7RMD0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 139

 Score = 52.0 bits (119), Expect = 7e-06
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +1

Query: 175 KNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
           +   S P + LE  +E F+E  RQI IIVSDFQP  Q VLNQK+
Sbjct: 4   EEKQSEPFDLLEQTIEQFVETTRQIGIIVSDFQPGSQGVLNQKI 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,221,822
Number of Sequences: 1657284
Number of extensions: 5163996
Number of successful extensions: 8987
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8986
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)