Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_P08
(503 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003353-1|AAH03353.1| 135|Homo sapiens mediator of RNA polymer... 53 5e-07
AY598325-1|AAT06736.1| 135|Homo sapiens L6 protein. 53 5e-07
AY453397-1|AAS47514.1| 135|Homo sapiens transformation-related ... 53 5e-07
AY277599-1|AAQ18038.1| 135|Homo sapiens transformation-related ... 53 5e-07
AY971956-1|AAY46814.1| 1892|Homo sapiens abnormal spindle-like m... 29 9.2
AY367065-1|AAR12641.1| 3477|Homo sapiens abnormal spindle-like m... 29 9.2
AY099893-1|AAM44122.1| 825|Homo sapiens abnormal spindle protei... 29 9.2
AY099891-1|AAM44120.1| 826|Homo sapiens abnormal spindle protei... 29 9.2
AL353809-5|CAH72552.1| 3477|Homo sapiens asp (abnormal spindle) ... 29 9.2
AL353809-3|CAH72550.1| 1142|Homo sapiens asp (abnormal spindle) ... 29 9.2
AF509326-1|AAN40011.1| 3477|Homo sapiens abnormal spindles protein. 29 9.2
>BC003353-1|AAH03353.1| 135|Homo sapiens mediator of RNA polymerase
II transcription, subunit 10 homolog (NUT2, S. cerev
protein.
Length = 135
Score = 53.2 bits (122), Expect = 5e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKL 41
>AY598325-1|AAT06736.1| 135|Homo sapiens L6 protein.
Length = 135
Score = 53.2 bits (122), Expect = 5e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKL 41
>AY453397-1|AAS47514.1| 135|Homo sapiens transformation-related
protein 20 protein.
Length = 135
Score = 53.2 bits (122), Expect = 5e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKL 41
>AY277599-1|AAQ18038.1| 135|Homo sapiens transformation-related
protein 17 protein.
Length = 135
Score = 53.2 bits (122), Expect = 5e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 184 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM 306
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKL 41
>AY971956-1|AAY46814.1| 1892|Homo sapiens abnormal spindle-like
microcephaly associated splice variant 1 protein.
Length = 1892
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 1042 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 1100
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 1101 RDSGSFE-QYSENIKLLMDWVNAVCA 1125
>AY367065-1|AAR12641.1| 3477|Homo sapiens abnormal spindle-like
microcephaly-associated protein protein.
Length = 3477
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 1042 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 1100
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 1101 RDSGSFE-QYSENIKLLMDWVNAVCA 1125
>AY099893-1|AAM44122.1| 825|Homo sapiens abnormal spindle protein
ASP protein.
Length = 825
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 636 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 694
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 695 RDSGSFE-QYSENIKLLMDWVNAVCA 719
>AY099891-1|AAM44120.1| 826|Homo sapiens abnormal spindle protein
ASP protein.
Length = 826
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 636 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 694
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 695 RDSGSFE-QYSENIKLLMDWVNAVCA 719
>AL353809-5|CAH72552.1| 3477|Homo sapiens asp (abnormal spindle)
homolog, microcephaly associated (Drosophila) protein.
Length = 3477
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 1042 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 1100
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 1101 RDSGSFE-QYSENIKLLMDWVNAVCA 1125
>AL353809-3|CAH72550.1| 1142|Homo sapiens asp (abnormal spindle)
homolog, microcephaly associated (Drosophila) protein.
Length = 1142
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 292 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 350
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 351 RDSGSFE-QYSENIKLLMDWVNAVCA 375
>AF509326-1|AAN40011.1| 3477|Homo sapiens abnormal spindles protein.
Length = 3477
Score = 29.1 bits (62), Expect = 9.2
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 133 ERRTAIL*LV*ISIKNSMSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKM*V 312
E+ +L + + + +S L+ L+ ++ F+++ + I+ +S ++N+K
Sbjct: 1042 EKTLRLLWKIAFAFQVDISLNLDQLKEEIA-FLKHTKSIKKTISLLSCHSDDLINKKKGK 1100
Query: 313 EN*LKFQMQYSENKKLFVKAIKYLCA 390
+ F+ QYSEN KL + + +CA
Sbjct: 1101 RDSGSFE-QYSENIKLLMDWVNAVCA 1125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,974,012
Number of Sequences: 237096
Number of extensions: 667600
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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