Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P05
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    31   0.13 
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    30   0.31 
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   2.2  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    26   5.0  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   6.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   6.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   8.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.8  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +3

Query: 510 STGPIIVKNAIKSWRATKEFNYKMFKRLYEETGGSYESLDDGCQFLNFKTDLFSLKEVFN 689
           ++ PI  ++++KS +  +  NY   K+   E   SY ++DD  +  NF+ +  SL+ + +
Sbjct: 22  NSSPIDYEHSLKSLQDERTLNYPN-KQFNSENPSSYYNMDDSGELCNFELEKDSLESMIH 80


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 429 NCAYCENVTKPIVLYNVTRHEFNKYAYST----GPIIVKNAIKSWRATKEFN 572
           N    E +++PI   N+T+ EF  + + T    GP +    ++ W+  K FN
Sbjct: 74  NQIMAERISEPIHCENITKVEFILHHFDTTARYGPYLGMTRMQRWKRAKNFN 125


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 360 NFMSARCLVPSNYLIWEATRPLANCAYCENVTK 458
           NF     L+P N   W A   L NC+ C N  K
Sbjct: 330 NFTYTLDLIPCNATSWSAYSLLKNCSDCANSYK 362


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 465 VLYNVTRHEFNKYAYSTGP--IIVKNAIKSWRATKEFNYKMFKRLYEETGGSYESLDDG 635
           ++  V + EFN  +       I+ ++ +  W+A  E NY+  + ++E  G      ++G
Sbjct: 68  LILQVLQDEFNVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLGKQLLEKEEG 126


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 594 YEETGGSYESLDDGCQFLNFKTDLFS 671
           Y++   S E +DD    L FKT++FS
Sbjct: 131 YQQVAQSIEDIDDEQWDLTFKTNIFS 156


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 556 QPKNLIIRCLKDCMKRLEVAMRAWMTDVNS*ILKLTCLA*RKFSI 690
           +PK  I  CL DC+K + +   +WM      + +L+ LA R  S+
Sbjct: 662 EPKKFI--CLGDCVKEVSLNATSWMLFYRWDVHELSNLAERFVSL 704


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 522 IIVKNAIKSWRATKEFNYKMFKRL 593
           +I KN I  +RA K+   K+FKRL
Sbjct: 206 LIRKNIIPYYRAYKQIPLKIFKRL 229


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 635 SVIQALIATSSLFIQSFKHLIIKFFGCSP 549
           +VI   + TS +FI+S KH+   F    P
Sbjct: 741 NVILLKLVTSEIFIRSIKHVFRNFLAVVP 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,611
Number of Sequences: 5004
Number of extensions: 53903
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)