Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P05
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    28   6.2  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 558 TKEFNYKMFKRLYEETGGSYESLDDGCQFLNFKTDLFSLKEVFNMPE 698
           T+ F+Y+M + L       + +L    +FLN K +  +++E+ N  E
Sbjct: 195 TENFSYQMLEALTYHVSKRWLNLGTAVEFLNIKRNATTIEELGNFKE 241


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 755  TVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQSFKH 579
            T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +F +
Sbjct: 976  TNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-TFPN 1029

Query: 578  LIIKF 564
            L+  F
Sbjct: 1030 LVASF 1034


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 755  TVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQSFKH 579
            T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +F +
Sbjct: 976  TNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-TFPN 1029

Query: 578  LIIKF 564
            L+  F
Sbjct: 1030 LVASF 1034


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 755  TVTPSNIPRFLS-WFIFHSFFRHIENFL*AKQVSFKIQELTSVIQALIATSSLFIQSFKH 579
            T T S   RFLS WF+ ++    +  FL      F IQ   SVI  ++A SSL + +F +
Sbjct: 976  TNTTSCYLRFLSAWFLSYASTLPLIYFL-----VFNIQNTKSVIPIILAISSLSV-TFPN 1029

Query: 578  LIIKF 564
            L+  F
Sbjct: 1030 LVASF 1034


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,451
Number of Sequences: 27780
Number of extensions: 292755
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)