Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P05
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +3

Query: 162 RKRSLKKRICAVQKTAIANGLNNFEMKQFDLICDYNHNDKSEKFNKR 302
           R R  K+R  + +   I++  NN++   ++   +YN+N+ +  +NK+
Sbjct: 299 RSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYN-NYNKK 344


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 RYRKRSLKKRICAVQKTAIANGLNNFEMKQFDLICDYNHNDKSEK 290
           R R R  K+R  + +   I++  NN++   ++   + N+N+ + K
Sbjct: 64  RERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 RYRKRSLKKRICAVQKTAIANGLNNFEMKQFDLICDYNHNDKSEK 290
           R R R  K+R  + +   I++  NN++   ++   + N+N+ + K
Sbjct: 64  RERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 RYRKRSLKKRICAVQKTAIANGLNNFEMKQFDLICDYNHNDKSEK 290
           R R R  K+R  + +   I++  NN++   ++   + N+N+ + K
Sbjct: 64  RERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 RYRKRSLKKRICAVQKTAIANGLNNFEMKQFDLICDYNHNDKSEK 290
           R R R  K+R  + +   I++  NN++   ++   + N+N+ + K
Sbjct: 64  RERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 420 PLANCAYCENVTKPIVLYNV 479
           PL  C Y  + T   +LYNV
Sbjct: 299 PLTGCLYYFSTTINPILYNV 318


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 222 LNNFEMKQFDLICDYNHNDKSEKFNKR 302
           + +FE+  +DL  ++N N    K +K+
Sbjct: 6   VESFEITDYDLENEFNINRPRRKLSKK 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,930
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)