Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P04
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   176   3e-45
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   3.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  176 bits (429), Expect = 3e-45
 Identities = 95/212 (44%), Positives = 123/212 (58%), Gaps = 1/212 (0%)
 Frame = +3

Query: 114 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTW 290
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A     
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66

Query: 291 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 470
              T P                     +DLFGS                 + Y  KK+ K
Sbjct: 67  ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122

Query: 471 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 650
           P  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVV 182

Query: 651 EDDKVSVDLLTEKIQXFEXFVQSVDIAAFNKI 746
           EDDKVS++ L E+++ FE +VQS DIAA +K+
Sbjct: 183 EDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 776 YKYITCYGCLDFVKCSNVNRLYKXFKXLNFFCQQINRNFVVLDDTHNLQFIYAI 615
           ++ ITC   LD +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 80  HRNITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 599 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 492
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 313 PPVLNPRLPPQQRKTTMTT 369
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 252 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*EPWAVLTSPT 85
           +Y +VV G G  P  C +   L  QLE     E +    F + ++      P A L S  
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367

Query: 84  AIVSFS 67
            I SFS
Sbjct: 368 RIKSFS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,566
Number of Sequences: 5004
Number of extensions: 56203
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)