Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P04
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             217   1e-56
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               58   6e-09
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 49   4e-06
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.2  
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           28   7.5  
SB_21148| Best HMM Match : PAN (HMM E-Value=0.49)                      28   7.5  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 28   9.9  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  217 bits (529), Expect = 1e-56
 Identities = 111/214 (51%), Positives = 133/214 (62%), Gaps = 3/214 (1%)
 Frame = +3

Query: 114 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWS 293
           L+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY   ++    
Sbjct: 12  LSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGEGKQNFPG 71

Query: 294 QGTSPLX---XXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKS 464
           +  S                         +DLFGS                LKAY +KK+
Sbjct: 72  EKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQERLKAYEEKKA 131

Query: 465 KKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMC 644
           KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKLVP+ YGI KLQI  
Sbjct: 132 KKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPLAYGIKKLQITV 191

Query: 645 VIEDDKVSVDLLTEKIQXFEXFVQSVDIAAFNKI 746
           V+EDDK+S D L E+I  FE FVQSVDIAAFNKI
Sbjct: 192 VVEDDKISTDFLEEEICKFEDFVQSVDIAAFNKI 225


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
 Frame = +3

Query: 438 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 605
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 606 PVGYGINKLQIMCVIEDDKVSVDLLTEKIQXFEXF 710
            + YG+ KLQI CVIED KVS D L +K+  FE F
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 162 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 266
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +3

Query: 597 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQXFEXF 710
           KLV + YG+ KLQI CVIED KVS D L +K+  FE F
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 PPRALNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 209
           P   +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 58  PQFQVNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 569 FNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFLVT 390
           F +  L+F F+ +  ++ W    ++     E WF ++L S+     F  +F F    LVT
Sbjct: 324 FTTHNLLFFFILLCMVLDWFQPAKSDTAKTELWFSQILASVL--VAFKFAFPFFSASLVT 381


>SB_21148| Best HMM Match : PAN (HMM E-Value=0.49)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 761 CYGCLDFVKCSNVNRLYKXFKXLNFFCQQIN 669
           C  CLD +KC +VN        L F+C+ ++
Sbjct: 93  CMRCLDILKCLSVNFAAIADSSLKFWCELLS 123


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 19  THFLTQSVWLSRKSCYTKRNYGCRR 93
           T FL  S+ L+ + CYT   YGC +
Sbjct: 159 TGFLECSMKLNHEECYTNDEYGCAK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,140,878
Number of Sequences: 59808
Number of extensions: 434061
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)