Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P03
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    28   0.92 
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.6  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   2.8  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   3.7  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   4.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   8.6  

>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 134 GHSRQITSDLRKKSIVLRINHGVNKYG*TY*SLFYLVYGYSSA 6
           G  + +  D+  K I++  NHG+     +  + +YL+Y + +A
Sbjct: 218 GEQKSLAEDIANKDILILRNHGIITAAESVGAAYYLMYQFLAA 260


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +2

Query: 293 GFTFKQIIGNERKRK--YAEFYRTYDAEKE-FEEMRKK 397
           G T+  I    + RK  Y ++Y T+D  KE F+E++K+
Sbjct: 362 GRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQ 399


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 VIKRNIIVALALSGVAGFTFKQIIGNER 328
           V  R IIV  A   VA FTF+Q+ G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 157 NFSKNIIRHGWRKCSIDSEQASDA 228
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 138 SGSQSSDNFRFEKKIY 91
           +GS++ D++RF KKIY
Sbjct: 258 AGSENMDHYRFAKKIY 273


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 178 RHGWRKCSIDS---EQASDARSPQCRHQT*HYCCFGSLWR 288
           +HGWRK SI S   ++ +      C  +   YC  G  WR
Sbjct: 28  KHGWRKQSIYSLLTDRFASTNPKPCNPEDREYC--GGNWR 65


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 400 SIPILLNMNYHSVVLLLFCCE*CY 471
           S+ +    +YHS +  + CC  CY
Sbjct: 447 SLLVQYTKDYHSEIAQMLCCSLCY 470


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 136 TV*LGIXNFSKNIIRHGWRKCSIDSEQAS 222
           TV  G   F   +  H WRK S DSE  S
Sbjct: 167 TVGSGASYFHNCLQAHNWRKYSEDSESMS 195


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 341 AEFYRTYDAEKEFEEMRKKGLFQSC 415
           A+F+R Y+A K F  ++K  +   C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,914
Number of Sequences: 5004
Number of extensions: 29333
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)