Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P03
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204...    29   2.8  
08_02_0340 + 15981210-15981467                                         27   8.7  

>08_02_1465 -
           27319377-27319405,27319936-27320101,27320336-27320444,
           27320865-27321448
          Length = 295

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 318 PMICLKVKPATPERAKATIMLRLMTALRRPR 226
           P ICL   PA     +  ++ RL + LRRPR
Sbjct: 141 PTICLVFDPAVSPHFEVLVIPRLRSELRRPR 171


>08_02_0340 + 15981210-15981467
          Length = 85

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 182 MAGESAVSTASKPQMR-GLLNAVIKRNIIVALALSGVAGFT 301
           MA   A    ++PQ+R GL+ A I  ++I ALA  GV G T
Sbjct: 1   MATTLADEKQNQPQIRFGLIVACILLDVIPALAAEGVDGDT 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,354,463
Number of Sequences: 37544
Number of extensions: 174036
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)