Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_P02
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   0.99 
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    25   5.3  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    24   7.0  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 121  QAWGWGWRKPRPPTEQ*G 68
            +AW  GW  PRPP E+ G
Sbjct: 1738 KAWEEGWIVPRPPAERTG 1755


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 94  AFASPNPKPEPVL 132
           AF S NPKP P+L
Sbjct: 238 AFVSVNPKPRPIL 250


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 58  KLFTLIALLVAVAFASPNPKPEP 126
           K+  +IALL ++A ASP P  +P
Sbjct: 2   KITAVIALLFSLAAASPIPVADP 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,994
Number of Sequences: 5004
Number of extensions: 10267
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)