Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_O20
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.30
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.30
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 29 0.52
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 29 0.68
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.90
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.8
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 4.8
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 6.4
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 8.4
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 8.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 8.4
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/101 (20%), Positives = 39/101 (38%)
Frame = +1
Query: 424 ITKLESRVNHQHTIRKEMQILFEEEKASLIEQHKRDERAVSDMEDXXXXXXXXXXXXKDE 603
IT L+ + + ++ KE +E E I H R + + D+ K
Sbjct: 1065 ITSLKEDIEKERSLMKECHSNYESE----IVSHGRTTQKLRDLRTEFDEVNTKYLKLKAN 1120
Query: 604 FNTAAKEHKDLKANWDKEKTDLHKQIADLKDKLLEANVSNK 726
F + +W+ ++ + +I+ LKD +L NK
Sbjct: 1121 FEQQHSGLSGAEKDWNIQRKAMEDEISSLKDYILGLENQNK 1161
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.30
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +1
Query: 487 FEEEKASLIEQHKRDERAVSDMEDXXXXXXXXXXXXKDEFNTAAKEHKDL---------- 636
F+E+ A + Q K +E+ S ++ ++ T K+ KD
Sbjct: 586 FQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLE 645
Query: 637 KANWDKEKTDLHKQIADLKDKLLEANVSNK 726
+AN++++++ L + DL+ KLL+ SNK
Sbjct: 646 RANFEQKESTLSDENNDLRTKLLKLEESNK 675
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 29.5 bits (63), Expect = 0.52
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Frame = +1
Query: 190 DKLSASTNLNFSDST---QSIKEGLSNL--LTFGKRKSSIGSVDDVTPDKRLRRDSSGNG 354
D L A +L+FSDS QS + ++L L SI S TP +GN
Sbjct: 355 DGLQALPHLDFSDSAVTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPV---SGNGNV 411
Query: 355 TTAPPSPWETKRLKIDLIAAKAQITKLESRVNHQHT-IRKEM 477
APP ++ + +DLIA Q + + S ++ H I EM
Sbjct: 412 ADAPPDFSLSQVMPLDLIAPSMQPSAVSSPMSESHVQISSEM 453
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 508 LIEQHKRDERAVSDMEDXXXXXXXXXXXXKDE-FNTAAKEHKDLKANWDKEKTDLHKQIA 684
+++++ +D V+ + D D+ N A+ D+ DKE K I
Sbjct: 200 IMDKYLKDNEEVTKVSDEPIASHLFDLEGNDQNANVIAELRPDITMRIDKEALPFMKNIN 259
Query: 685 DLKDKLLEANVSN 723
L ++LLE ++ N
Sbjct: 260 QLSERLLEKSLGN 272
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.90
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +1
Query: 226 DSTQSIKEGLSNLLTFGKRKSSIGSVDDVTPDKRLRRDSSGNGTTAPPSPWETKRLKIDL 405
+ TQ +++ S + K KSSI S+ +T D L S N + R
Sbjct: 135 EDTQKLEQKHSTTPSSLKMKSSI-SLAAITADDSLHNSFSSNDIDDGFQTVTSSR-SYGK 192
Query: 406 IAAKAQITKLESRVNHQHTIR-KEMQILFEEEKASLIEQHKRD 531
+ +TK + R N Q +R KEMQ L +EE+ + H+++
Sbjct: 193 KKSTEPLTKRQ-RQNQQKKLRAKEMQELADEEQRRRLAAHRKE 234
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/96 (19%), Positives = 40/96 (41%)
Frame = +1
Query: 433 LESRVNHQHTIRKEMQILFEEEKASLIEQHKRDERAVSDMEDXXXXXXXXXXXXKDEFNT 612
L S ++ H++ +E+ + E+ + + K + K N
Sbjct: 366 LSSGISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENE 425
Query: 613 AAKEHKDLKANWDKEKTDLHKQIADLKDKLLEANVS 720
H+++KA +K+K DL D K++L++A +
Sbjct: 426 LRTRHREMKAALEKQKADL----IDHKNRLMQAKAA 457
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 519 LFYKRCLLFFKQYLHLFTYSMLVVYSRF*FGYLCFCSN 406
L YK C+ F+K+YL F + L Y R G + SN
Sbjct: 968 LNYKNCISFWKKYLKDFKFKSL-SYQREKMGVVELSSN 1004
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/106 (20%), Positives = 48/106 (45%)
Frame = +1
Query: 379 ETKRLKIDLIAAKAQITKLESRVNHQHTIRKEMQILFEEEKASLIEQHKRDERAVSDMED 558
ETK ++D A ++ +S+ + ++ Q E++ S++E+ K D + ME+
Sbjct: 77 ETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQF---EKRISILEKEKEDLQR--KMEE 131
Query: 559 XXXXXXXXXXXXKDEFNTAAKEHKDLKANWDKEKTDLHKQIADLKD 696
+ + T + ++ ++ W +E K+I DLK+
Sbjct: 132 LTVESMEVVRLTR-QVETLSTQYSIQRSQWVREDEKKKKEIQDLKE 176
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +1
Query: 85 LNASQYKKMAKESDMSLYSD-VLEPFRRVIN--------TEPPKDKLSAS 207
+ + Q K A+ SD SL ++ L P +++IN EPPKDK AS
Sbjct: 164 VESKQILKEARASDASLNAERPLFPVKKIINGNVSLSINMEPPKDKKIAS 213
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 616 AKEHKDLKANWDKEKTDLHKQIADLKDKLLEANVSNKD 729
+KE + D+ KTD+HK+ K LE+ +N+D
Sbjct: 106 SKEKISKSSKQDEHKTDVHKESVSKLSKNLESR-NNRD 142
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 370 SPWETKRLKIDLIAAKAQITKLESRVNHQHTIRKEMQILFEEEKA 504
SP T ++ KA +K +SRV + +ILFE E+A
Sbjct: 167 SPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEA 211
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 8.4
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 139 SDVLEPFRRVINTEPPKDKLSAST-NLNFSDSTQSIKEGLSNLLTFGKRKSSIGSVDDVT 315
SD+ E I+ ++LS +++ S+ T+ K KR S+
Sbjct: 547 SDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESKRLSTGVQKQSPA 606
Query: 316 PDKRLRRDSSGNGTTAP-PSPWET 384
K + +SG+ TTAP PSPW++
Sbjct: 607 ASKEIPV-TSGSQTTAPKPSPWKS 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,722
Number of Sequences: 5004
Number of extensions: 47438
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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