Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O18
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.82 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   3.3  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   3.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   7.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   7.6  

>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 793 LFSGNLYGFFEEEPNHRLRARWCCQRPLGTSSKLSWLV 680
           L S + YG   EEP+     RW  +RPL T     +L+
Sbjct: 33  LLSKDYYGHSIEEPDENNPTRWRYERPLDTVRAWQYLI 70


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 329 STKTAMIQN*KVDLSTTMFTNYNNGIATGERSTG-RAQNIQWTVARSPENSTWFTGTQAS 505
           S   +M  +   DL T+   + N      E S   +  N+      SPE+++W  G+Q +
Sbjct: 321 SNSGSMTNSTSTDLPTSNLPSQNAPARPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTN 380

Query: 506 TTASGRRQE 532
             A+  R E
Sbjct: 381 IPANTNRSE 389


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 668 LPSCYQPRQLTGRTQGSLTTPPCTESVIWLLFKEP 772
           L S Y    L G   G L  P  TES  +L FK P
Sbjct: 21  LQSIYPEIHLDGNNYGRLNIPVNTESDYFLSFKSP 55


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 629  CCTKGSNCTTLSSSRCFEPTINRTPKTASPSG 534
            CCT+GS    L +S+C    I+   +  +P+G
Sbjct: 1238 CCTEGS-INALLNSKCLPEFIDAADENTTPTG 1268


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 345 IAVFVDTPTVARIDDGTRMIDRVPPFQW 262
           I+V+ +TP++A +D  T  ID V  F+W
Sbjct: 331 ISVY-ETPSLALVDKKTIKIDGVQNFEW 357


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 605 YSYCLSCNTKAIKLHFASPSTLPSC 679
           Y YCL C  K++   F+  S    C
Sbjct: 548 YYYCLQCECKSLHWRFSDRSNCDEC 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,639
Number of Sequences: 5004
Number of extensions: 84417
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)