Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_O18
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 72 6e-13
AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic anhy... 64 9e-11
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 64 1e-10
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 63 2e-10
U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydr... 62 5e-10
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 54 2e-07
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 36 0.036
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 36 0.036
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 36 0.036
AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class I... 36 0.036
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 36 0.036
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 36 0.036
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 35 0.082
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 35 0.082
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 35 0.082
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical pr... 30 2.3
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 29 4.1
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 5.4
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 28 9.5
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 28 9.5
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 28 9.5
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Frame = +1
Query: 178 EKFPQARGTRQSPVDIVTSRVKSGASL---PPLKWRYSVNHPRSIV--NPGYCWRVDENG 342
+KF +A RQSP+DIV V + L Y ++ G+ V N
Sbjct: 42 KKFKKAAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFLVNVKRN- 100
Query: 343 YDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGE 522
+ L L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNTS Y SF
Sbjct: 101 CGTFLTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS-YESFNV 159
Query: 523 AAGKPD 540
A KPD
Sbjct: 160 ALSKPD 165
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 713 GSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 814
GSLTTPP E VIW LF EPV+VS QL+++R +
Sbjct: 225 GSLTTPPYNECVIWTLFTEPVEVSFGQLNVLRNI 258
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 71.7 bits (168), Expect = 6e-13
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Frame = +1
Query: 193 ARGTRQSPVDIVTSRVKSGASL---PPLKWRYSVNHPRSIV--NPGYCWRVDENGYDSEL 357
A RQSP+DIV V + L Y ++ G+ V N + L
Sbjct: 2 AAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFLVNVKRN-CGTFL 60
Query: 358 KGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKP 537
L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNTS Y SF A KP
Sbjct: 61 TANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS-YESFNVALSKP 119
Query: 538 D 540
D
Sbjct: 120 D 120
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 713 GSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 814
GSLTTPP E VIW LF EPV+VS QL+++R +
Sbjct: 180 GSLTTPPYNECVIWTLFTEPVEVSFGQLNVLRNI 213
>AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic
anhydrase protein 6 protein.
Length = 319
Score = 64.5 bits (150), Expect = 9e-11
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 6/178 (3%)
Frame = +1
Query: 199 GTRQSPVDIVTSRVKSGASLPPLKWR--YSVNHPRSIVNPGYCWRVDENGYDSELKGGPL 372
G QSP+DIV G L + Y VN G + G SEL L
Sbjct: 65 GRTQSPIDIVPVITAFGEHLQNAHFEVTYESTGEFKAVNDGNSIWLMREGNSSELAISFL 124
Query: 373 NNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD-XXX 549
+ Y L + HW GSEHT+ G ++GE+HL+H NT ++ + +A +P+
Sbjct: 125 PEEQYHLDAVNFHWATEPMNGSEHTIGGVGYAGEMHLIHRNT-RFATMADALKQPNGVIA 183
Query: 550 XXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPT--KT-AYWTYPG 714
+ ++ LLP V +KG + C D P KT +W Y G
Sbjct: 184 IAVFLNESHDDNAVFSPLINLLPQVIYKGSECKLCS-FDFQTFFPVAEKTKEFWMYEG 240
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 710 QGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCG 823
+GS TT P E+V W++ + + +S+ QL +R+++ G
Sbjct: 239 EGSETTDPFRETVNWIVIRAALPISSHQLDKLREVRAG 276
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 64.1 bits (149), Expect = 1e-10
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Frame = +1
Query: 139 WGYTCEN--GPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHP--RSIV 306
W Y ++ GP W G QSP++I V+ + +K+ + +HP IV
Sbjct: 5 WSYCDDDECGPNRW------PTGQHQSPINIDLGEVERKDTHDGIKF-VNYDHPIQGDIV 57
Query: 307 NPGYCWRV--DENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELH 480
N G+ ++ + E+ GG L+ VY+L Q+H HWG + EGSEHT+ G + ELH
Sbjct: 58 NNGHSVQMTPELRSEHPEIYGGGLDQ-VYRLVQYHFHWGENDNEGSEHTLGGLRYPAELH 116
Query: 481 LVH 489
LVH
Sbjct: 117 LVH 119
Score = 51.2 bits (117), Expect = 9e-07
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +2
Query: 704 RTQGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLK 817
R +GSLTTPPC+E V W +F EPV V+ +QL L R+++
Sbjct: 181 RYEGSLTTPPCSEIVTWTIFTEPVTVTHDQLELFRQVQ 218
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 63.3 bits (147), Expect = 2e-10
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Frame = +1
Query: 127 ADNEWGYTCENGPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIV 306
+D+ WGY NGP TW K +QSP+DI V Y ++ +
Sbjct: 24 SDHGWGYDENNGPDTWQGKCQNH--LKQSPIDIRAPDVDYALLHRMHFLNYDMDGKIELS 81
Query: 307 NPGYCWRVDENGYDS------ELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFS 468
N G + G++S ++GG L + YKL Q+H HWG + GSEH + +
Sbjct: 82 NTGRT--LFAGGFESWQHKQPMIQGGGLKHR-YKLAQFHLHWGQNDAVGSEHAMGSLHYP 138
Query: 469 GELHLVHWNTSKYHSFGEAAGKPDXXXXXXXXXXXXSK--HRELDKVVQLLPFVQHKGDK 642
ELHLVH + + EA +PD + + + + L ++H G+K
Sbjct: 139 AELHLVH--VREGLTLKEALSRPDGLAVVGVFLAKTNDPVANKFSPISERLHDLRHSGNK 196
Query: 643 VTFCEPLDPAKLLPTKT-AYWTYPG 714
T + +LP T A++ Y G
Sbjct: 197 -TELKNFRTKYVLPLDTEAFYRYEG 220
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +2
Query: 704 RTQGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 814
R +GSLTTP C+E+VIW + EP+ +S+ QL L+R+L
Sbjct: 217 RYEGSLTTPDCSEAVIWTVLAEPMAISSHQLHLLRQL 253
>U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydrase
protein 1 protein.
Length = 365
Score = 62.1 bits (144), Expect = 5e-10
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = +1
Query: 304 VNPGYCWRVDENGYDSE-----LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFS 468
VN G RV GY S+ + GPL Y++Q+ H G N GSEHT++GR F
Sbjct: 152 VNTGQMVRV-RIGYSSKKPSVNITSGPLYGYRYRVQRIDFHMGRKNENGSEHTINGRRFP 210
Query: 469 GELHLVHWNTSKYHSFGEAAGKPDXXXXXXXXXXXXSK-HRELDKVVQLLPFVQHKGDKV 645
E+ LV +NT Y +F A+ P + ++EL K+ + +K +V
Sbjct: 211 MEVQLVAYNTDLYPNFTSASKSPHGIAILSVLVDFGPETNQELIKLTIATASISYKDQRV 270
Query: 646 TFCEPLDPAKLLPTKTAYWTYPGVFDNTTVH 738
+ +P +LLP TY G + H
Sbjct: 271 QLAD-FEPWRLLPFTRDIITYEGSLTSPGCH 300
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 710 QGSLTTPPCTESVIWLLFKEPVQVSAE 790
+GSLT+P C E+V W++ +P+ + E
Sbjct: 291 EGSLTSPGCHETVTWIILNQPIFIKKE 317
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +1
Query: 94 VVVSDISKVIMADN-EWGYTCE--NGPATW--IEK--FPQARGTRQSPVDIVTSRVKSGA 252
++ IS + + N +W Y + GP W +EK + +G QSP+DI R+ A
Sbjct: 14 ILTCHISPLKSSQNYQWSYDSDVFGGPHFWGLVEKDWWMCKKGRLQSPIDIQPDRLLFDA 73
Query: 253 SLPPLKW 273
S+ P+ +
Sbjct: 74 SVKPVSY 80
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 53.6 bits (123), Expect = 2e-07
Identities = 59/201 (29%), Positives = 81/201 (40%), Gaps = 11/201 (5%)
Frame = +1
Query: 145 YTCENGPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNP 312
Y C GP W R G QSPV+I S++ L P+ ++ N
Sbjct: 11 YPCVIGPDFWGLLHGDWRMCTAGQMQSPVNIDPSQLLYDPHLMPINIEGNIVEA-VFENT 69
Query: 313 GYCWRVD----ENGYDSELKGGPLNNDVYKLQQWHCHWG-ALNGE-GSEHTVDGRSFSGE 474
G V N + GGP YKL Q H+G A GE GSEHTVD F E
Sbjct: 70 GQLPVVTVKDLPNRPTINITGGPTMPYRYKLHQISVHFGRADEGEKGSEHTVDRVRFPAE 129
Query: 475 LHLVHWNTSKYHSFGEAAGKP-DXXXXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTF 651
+ L+ +N++ Y +F A P + EL ++ + +KG + T
Sbjct: 130 IQLLAYNSALYPNFSVAMTSPRGLLAVSVIVDIGKTTSVELRRLTVASQSINYKG-QTTN 188
Query: 652 CEPLDPAKLLPTKTAYWTYPG 714
P+ LLP + Y TY G
Sbjct: 189 LTDFQPSALLPKTSHYVTYEG 209
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +2
Query: 644 LHFASPSTLPSCYQPRQLTGRT------QGSLTTPPCTESVIWLLFKEPVQVSAEQLSLM 805
+++ +T + +QP L +T +GSLT P C E+V W++ P+ ++ + L +
Sbjct: 180 INYKGQTTNLTDFQPSALLPKTSHYVTYEGSLTFPGCHETVTWVILNNPIYITNDDLQIW 239
Query: 806 RKLK 817
+++
Sbjct: 240 NEMQ 243
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 1712 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 1768
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 1769 FNNSTMSPNPTVVPQVFPTPNPSSP 1793
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 1780 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 1836
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 1837 FNNSTMSPNPTVVPQVFPTPNPSSP 1861
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 1338 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 1394
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 1395 FNNSTMSPNPTVVPQVFPTPNPSSP 1419
>AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 405
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 51 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 107
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 108 FNNSTMSPNPTVVPQVFPTPNPSSP 132
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 111 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 167
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 168 FNNSTMSPNPTVVPQVFPTPNPSSP 192
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = -2
Query: 794 AVQRKLVRVL*RGAKSPTPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKG 615
A+ +++R L A + TP T ++ TP Q V V S+ + S S + + S + C
Sbjct: 237 ALTPEMIRAL---ANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSCVSS 293
Query: 614 SNCTTLSSSRCFEPTINRTPKTASP 540
N +T+S + P + TP +SP
Sbjct: 294 FNNSTMSPNPTVVPQVFPTPNPSSP 318
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 34.7 bits (76), Expect = 0.082
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = -2
Query: 743 TPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKGSNCTTLSSSRCFEPTIN 564
T T+ +S + + + + GS+++GS G+ TL+ T GS+ T SSS + +
Sbjct: 337 TGSTITISGSSSIIV-STVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQS 395
Query: 563 RTPKTAS--PSGFPAASPKLWYLLVFQ*TRWSSPENERPSTVCSEPSPLSAP 414
P T S PS + SP S+P ST+ E S S+P
Sbjct: 396 PAPNTGSTTPSQTSSQSPS-----PSMNPSSSTPTGSSQSTITPEGSTASSP 442
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 34.7 bits (76), Expect = 0.082
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = -2
Query: 743 TPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKGSNCTTLSSSRCFEPTIN 564
T T+ +S + + + + GS+++GS G+ TL+ T GS+ T SSS + +
Sbjct: 544 TGSTITISGSSSIIV-STVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQS 602
Query: 563 RTPKTAS--PSGFPAASPKLWYLLVFQ*TRWSSPENERPSTVCSEPSPLSAP 414
P T S PS + SP S+P ST+ E S S+P
Sbjct: 603 PAPNTGSTTPSQTSSQSPS-----PSMNPSSSTPTGSSQSTITPEGSTASSP 649
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 34.7 bits (76), Expect = 0.082
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = -2
Query: 743 TPCTVVLSKTPGYVQ*AVLVGSSLAGSRGSQNVTLSPLCCTKGSNCTTLSSSRCFEPTIN 564
T T+ +S + + + + GS+++GS G+ TL+ T GS+ T SSS + +
Sbjct: 544 TGSTITISGSSSIIV-STVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQS 602
Query: 563 RTPKTAS--PSGFPAASPKLWYLLVFQ*TRWSSPENERPSTVCSEPSPLSAP 414
P T S PS + SP S+P ST+ E S S+P
Sbjct: 603 PAPNTGSTTPSQTSSQSPS-----PSMNPSSSTPTGSSQSTITPEGSTASSP 649
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 526 PPPRSCGTCLCSSEPGGVL 470
P PR+C C+C S GG+L
Sbjct: 371 PSPRNCAICICPSGYGGIL 389
>Z74038-1|CAA98497.2| 578|Caenorhabditis elegans Hypothetical
protein F58B4.1a protein.
Length = 578
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 526 PPPRSCGTCLCSSEPGGVL 470
P PR+C C+C S GG+L
Sbjct: 371 PSPRNCAICICPSGYGGIL 389
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 259 PPLKWRYSVNHPRSIVNPGYCWRVDENGY 345
PP+ ++V P S VN GYC + NGY
Sbjct: 104 PPIYTNFAVGEPFS-VNVGYCITIGMNGY 131
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 232 SRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGY 345
SR SG+ PP K R S + GYC R D+ Y
Sbjct: 192 SRSSSGSRTPPYKSRSSRRRCKDFEERGYCIRGDQCPY 229
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +1
Query: 40 VHSVDTRLTFTSKXTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 219
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 107 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 164
Query: 220 DIVTSRVKSGASLPPLKWRY 279
++ T+ V S W Y
Sbjct: 165 NMATNNVFSRGDCSDC-WEY 183
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +1
Query: 40 VHSVDTRLTFTSKXTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 219
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 36 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 93
Query: 220 DIVTSRVKSGASLPPLKWRY 279
++ T+ V S W Y
Sbjct: 94 NMATNNVFSRGDCSDC-WEY 112
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +1
Query: 40 VHSVDTRLTFTSKXTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 219
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 105 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 162
Query: 220 DIVTSRVKSGASLPPLKWRY 279
++ T+ V S W Y
Sbjct: 163 NMATNNVFSRGDCSDC-WEY 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,188,834
Number of Sequences: 27780
Number of extensions: 501068
Number of successful extensions: 1496
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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