Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O17
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...   135   9e-33
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    42   9e-05
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    29   0.86 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    28   2.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   2.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   2.6  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   4.6  

>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score =  135 bits (326), Expect = 9e-33
 Identities = 59/110 (53%), Positives = 76/110 (69%)
 Frame = +3

Query: 93  TEKFKKFKMSALARKLVNQLKSKEFRDYLMSTHFWGPVANWGIPLAAIADTRKDPNFISG 272
           +EK  +    ++ R+ +  LKS +FR YL STHFWGP++N+GIP+AAI D +KDP  ISG
Sbjct: 4   SEKLSQKAAQSVTRRFITWLKSPDFRKYLCSTHFWGPLSNFGIPIAAILDLKKDPRLISG 63

Query: 273 KMTFALSLYSLMFMRFAWKVQPRNLLLFACHFTNECAQLTQGARFINYHY 422
           +MT AL LYS +FMR+AW V PRN LL  CH  N   Q  QG RF+N+ Y
Sbjct: 64  RMTGALILYSSVFMRYAWMVSPRNYLLLGCHAFNTTVQTAQGIRFVNFWY 113


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +3

Query: 183 STHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFAC 362
           + HFW P   W + L+ I D  + P ++S +   AL     ++ R++  V+P+N      
Sbjct: 18  TVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATV 77

Query: 363 HFTNECAQLTQGARFINY 416
           +F        Q +R + Y
Sbjct: 78  NFFLAIVGAVQVSRILVY 95


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 277 IFPLIKFGSFLVSAMAASGIPQLATGPQKCVLIK*SLNSLLFSWFTSFLAKALILNFLNF 98
           +F +  +G +  SAMAA  IP+   G    +  +     L + W +S LA  L+   +NF
Sbjct: 415 MFIVDNYGRYAASAMAAIAIPRNIFGACFPLFAEKLFERLGYGWGSSLLAFLLVA--INF 472

Query: 97  SVS 89
           S++
Sbjct: 473 SIA 475


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 452 LFLDLFRTLDVVVVYKPGSLGELSAFVRKMTGEEQQVPRLDLPSEPHE 309
           +F + F T+D    + P  L + S  V+    E QQ+P LD   E  +
Sbjct: 537 IFREGFDTMDAYFPFDPYRLTKSSIIVQPFYNEWQQIPGLDDDEEEED 584


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 216 PNWQQGPRSVCSLNSP*TPCFSAGS 142
           PNW QG R+    N   TP ++ GS
Sbjct: 810 PNWAQGARTPAVANGSRTPAWNTGS 834


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 287 GKSHFSTYKIWILPCICYGC 228
           GK +  T   W L CICY C
Sbjct: 371 GKKYDRTVDYWSLGCICYEC 390


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 231 AIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLL 353
           ++A  + D + I    +F   LY+  F    W + P +LLL
Sbjct: 619 SVAPEKVDNSSIEQSSSFLTKLYTFPFTIITWLMHPTHLLL 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,060
Number of Sequences: 5004
Number of extensions: 69644
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)