Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O17
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   4.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   8.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   8.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTIILSNKLESSDDISL 114


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSNKLESSDDISL 114


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSNKLESSDDISL 114


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 523 IDW*HRN*SPECFLK 479
           +DW H    P+CF K
Sbjct: 81  VDWLHNIWRPDCFFK 95


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSDKLESSDDISL 114


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSDKLESSDDISL 114


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSDKLESSDDISL 114


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 412 TTTTSKVLKRSKKRKANDDVTL 477
           T+ TSK +  S K +++DD++L
Sbjct: 93  TSNTSKTVILSDKLESSDDISL 114


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 665 ILFGKQLNLLEACXLYITITEGPSFLVILQNE 760
           I++ K++++LEA    + +T+G   +  L+ +
Sbjct: 150 IIYSKRMDVLEATLRVLCMTDGKEGMHTLERQ 181


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 228 LVVYPNWQQGPRSVC 184
           L  YPNW Q     C
Sbjct: 109 LTPYPNWAQNKAGAC 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,716
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)