Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O16
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.3  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    25   9.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.7  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    25   9.7  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 164  FSEEDCIRQGGICVRTEECDPENISTISQFLCP 262
            FS  DC RQ  I +   E   +  ST+  F+CP
Sbjct: 1381 FSFVDCTRQITIYLAKTELLSDLYSTLLSFVCP 1413


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 185 RQGGICVRTEECDPENISTISQFLC 259
           RQ  +CV  E CD E    + + LC
Sbjct: 63  RQAHLCVLCESCDQEAYVKLVEALC 87


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 129 RCAAVLC*HKHHSVRRIASDKEVYACARRNVIQKTYRRFRNFYV 260
           R   V C +K+HS  R  S  +     R +  Q+T R F N  +
Sbjct: 15  RYCFVQCRNKYHSHVRYLSSAKKSGILRNSYNQRTERYFTNIMI 58


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 185 RQGGICVRTEECDPENISTISQFLC 259
           RQ  +CV  E CD E    + + LC
Sbjct: 60  RQAHLCVLCESCDQEAYVKLVEALC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,833
Number of Sequences: 5004
Number of extensions: 34611
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)