Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O16
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   8.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   8.9  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 161  PFSEEDCIRQGGICVRTEECDPENISTISQFLCP 262
            P S   CI Q  +C    +C  E +S  S   CP
Sbjct: 2880 PCSNGHCINQTKVCDGHNDCHDEQVSDESLATCP 2913


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 161  PFSEEDCIRQGGICVRTEECDPENISTISQFLCP 262
            P S   CI Q  +C    +C  E +S  S   CP
Sbjct: 2880 PCSNGHCINQTKVCDGHNDCHDEQVSDESLATCP 2913


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 153 HKHHSVRRIASDKEVYACARRNVIQKTYRRFRN 251
           HK  ++ R+ + K  +A ARRN IQ+  R   N
Sbjct: 332 HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,223
Number of Sequences: 27780
Number of extensions: 198547
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)